[1] "2025-04-29 18:30:58 MDT" [1] "1304" "130422" "d112" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130422a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:31:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.763, ave o2scale2 = 0.766" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "215 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.763, ave o2scale2 = 0.766" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "213 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:31:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:31:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:31:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:31:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 213 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1223 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:31:30 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.361 co2off = 367.25 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.55 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 46 52 0.04567795 0.04985417 0.04846323 2 71.29051 -59.685430 3 2 53 57 0.05194083 0.05542133 0.05449419 2 -13.74356 97.155133 5 2 299 307 0.25378322 0.26004592 0.25795651 3 -14.18933 94.265227 6 4 308 317 0.26074190 0.26700119 0.26456719 3 71.47322 -64.119785 7 3 318 327 0.26770052 0.27395984 0.27291678 3 41.96223 7.201629 9 4 572 577 0.46258542 0.46815284 0.46710837 2 71.62987 -68.325727 10 2 578 582 0.46954398 0.47580677 0.47511121 2 -14.41305 94.887314 13 2 770 777 0.67272135 0.67759256 0.67585368 3 -15.30678 95.400631 14 4 778 787 0.67828799 0.68454795 0.68211322 3 71.77298 -62.427605 15 3 788 796 0.68524306 0.69080677 0.69011128 3 41.79461 9.583319 17 4 1052 1061 0.88005200 0.88631484 0.88387921 2 71.88977 -64.157576 18 2 1062 1071 0.88701042 0.89327315 0.89083836 2 -15.22726 98.467715 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.296116 1.290914 -0.003076152 -1.5633142 0.007066426 2.7855518 3 1.296734 1.291532 -0.028223672 1.1708539 0.043168199 1.8952293 5 1.302442 1.297645 -0.014568216 1.3035983 0.031715849 4.2099075 6 1.302787 1.298016 0.007090012 0.7043669 0.024101001 2.4742377 7 1.302977 1.298230 0.005904479 -4.4198331 0.019561280 5.9767109 9 1.309981 1.305720 -0.004996897 -1.6466293 0.006824589 2.4586778 10 1.310099 1.305862 -0.015989034 -0.3994091 0.016013986 0.4000249 13 1.317119 1.313383 -0.011484308 0.8827839 0.023346498 2.0413908 14 1.317291 1.313594 0.008410882 -0.3476175 0.029339830 1.6133661 15 1.317651 1.313970 0.008923046 1.6315599 0.020796250 1.6842112 17 1.322460 1.319144 -0.002061500 -0.5096581 0.007308488 1.4975919 18 1.322731 1.319429 -0.008225984 0.5107967 0.022690745 1.6323677 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.59 co2l1 = 0.36 co2l0 = 0.119" [1] "co2l0 = -98.09 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "32 out of 660 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "628 out of 1070 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "628 out of 1070 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"