[1] "2025-04-29 18:29:56 MDT" [1] "1304" "130420" "d110" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130420a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83828 63 [1] 83828 [1] 83828 [1] "testing skipping spike filter" [1] 83828 [1] 83828 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:30:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.767" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "141 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.767" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "143 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:30:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:30:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:30:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:30:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 143 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with variable TFCELL" [1] "TEMP: 1247 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:30:16 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.361 co2off = 367.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 7.52 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 265 273 0.1919208 0.1974896 0.1954018 3 -14.57212 100.047218 3 4 274 283 0.1988812 0.2051476 0.2027100 3 71.40733 -64.616105 4 5 284 293 0.2058430 0.2121066 0.2110616 NA 30.34378 -6.848683 5 3 294 303 0.2128032 0.2190662 0.2180231 3 41.83350 4.993005 7 4 537 545 0.4006997 0.4069630 0.4046755 2 71.37248 -64.230694 8 2 546 554 0.4083537 0.4139213 0.4118320 2 -14.30014 100.597904 13 4 981 990 0.7923571 0.7986169 0.7961823 2 71.72529 -63.646305 14 2 991 1000 0.7993124 0.8055752 0.8031395 2 -15.31570 95.706717 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.304949 1.299955 -0.0093203976 2.2056370 0.021227684 5.0516165 3 1.304536 1.299528 0.0029642659 -1.0194619 0.018943606 5.4222364 4 1.304201 1.299134 -0.0267589820 -0.3461538 0.018959301 0.4536635 5 1.303870 1.298784 -0.0009750808 2.2879997 0.006429911 3.1514824 7 1.299344 1.293899 0.0033294094 0.8752529 0.010392948 4.1869205 8 1.299417 1.293988 -0.0104619198 -2.9217824 0.025686302 7.1817532 13 1.316505 1.312600 0.0014655553 -0.2883455 0.008307762 3.7396031 14 1.316914 1.313012 0.0157966330 1.9951201 0.039372063 6.2390118 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.634 co2l1 = 0.36 co2l0 = 0.114" [1] "co2l0 = -98.13 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1122 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "0 out of 1122 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"