[1] "2025-04-29 18:28:27 MDT" [1] "1304" "130417" "d107" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130417a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:28:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.758, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "132 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.758, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "134 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:28:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:28:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:28:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:28:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 134 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1301 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:29:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.353 co2off = 379.76 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.33 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 5 0.0009014468 0.00368559 0.002988493 2 59.54862 83.07791 2 2 6 14 0.0064687500 0.01273154 0.010245763 2 -29.01490 239.71082 4 2 269 278 0.2083264757 0.21459008 0.212155660 3 -28.58805 237.87041 5 4 279 288 0.2152855035 0.22154523 0.219110818 3 59.55959 79.76179 6 3 289 298 0.2222407407 0.22850463 0.227461249 3 29.21448 151.87993 8 4 554 563 0.4171675347 0.42343056 0.420994148 2 59.51659 78.42725 9 2 564 573 0.4241261574 0.43039751 0.427956293 2 -28.33464 240.69744 10 5 574 583 0.4310928530 0.43735720 0.436312768 NA 18.30206 133.01714 12 2 831 837 0.6274780093 0.63235006 0.630959225 3 -28.16026 243.67843 13 4 838 847 0.6330453414 0.63930842 0.636872985 3 59.47244 78.94157 14 3 848 853 0.6400046296 0.64557176 0.646267332 3 29.32245 165.39482 16 4 1099 1108 0.8349768808 0.84123964 0.838804919 2 59.57078 82.08695 17 2 1109 1116 0.8419352141 0.84750810 0.845532600 2 -27.21023 235.82466 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.326977 1.323260 0.0005609227 0.20659458 0.000572822 0.2531257 2 1.326981 1.323389 -0.0140528714 -0.31354471 0.045594848 3.3610119 4 1.324582 1.320908 0.0026177821 -1.10670779 0.008927895 3.9727333 5 1.324444 1.320748 0.0054813740 -0.11303182 0.015842132 3.8009379 6 1.324373 1.320664 -0.0030266261 6.13386753 0.008312059 8.1187415 8 1.320899 1.317048 0.0009336148 -0.16406110 0.010849001 2.2890653 9 1.320986 1.317135 -0.0061219616 -0.89954365 0.017034555 2.8841271 10 1.320911 1.317085 -0.0098618509 1.94152250 0.006982679 4.0368363 12 1.316584 1.312669 -0.0028191666 0.30710393 0.004999644 2.0288007 13 1.316411 1.312388 0.0085778872 0.01515161 0.029482573 0.8589032 14 1.316425 1.312147 0.0017691482 13.61411008 0.002477251 19.2845457 16 1.311708 1.307353 -0.0017246519 -0.31176506 0.005353570 3.0899355 17 1.311639 1.307284 0.0018577081 0.55737678 0.019535504 3.1098450 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.331 co2l1 = 0.354 co2l0 = 0.217" [1] "co2l0 = -130.68 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "76 out of 285 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "209 out of 1136 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "209 out of 1136 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"