[1] "2025-04-29 18:27:41 MDT" [1] "1304" "130416" "d106" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130416a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:27:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.757, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "72 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.757, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "73 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:27:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:27:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:28:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:28:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 73 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1362 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:28:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.351 co2off = 372.85 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 6.02 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 210 219 0.1644866 0.1707552 0.1683155 2 59.52866 80.99746 3 2 220 229 0.1714508 0.1777299 0.1752917 2 -29.16853 239.03024 4 5 230 239 0.1784255 0.1846852 0.1836418 NA 20.42363 133.46500 6 2 506 510 0.3753375 0.3795174 0.3788217 3 -28.58756 242.97108 7 4 511 519 0.3802130 0.3857769 0.3836906 3 59.58721 84.65368 8 3 520 529 0.3871717 0.3934347 0.3923901 3 29.27049 149.94467 10 4 795 804 0.5820037 0.5882667 0.5858318 2 59.54959 87.38916 11 2 805 814 0.5889620 0.5952249 0.5927905 2 -28.70706 241.27639 13 2 1075 1082 0.7921564 0.7970286 0.7952880 3 -28.70850 239.59025 14 4 1083 1091 0.7977239 0.8039872 0.8015015 3 59.59660 80.51857 15 5 1092 1101 0.8046823 0.8109452 0.8099021 NA 21.18097 128.77356 16 3 1102 1111 0.8116406 0.8179089 0.8168637 3 29.32111 152.17296 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.319634 1.315307 -0.000742416 -0.32273948 0.006130367 2.500013 3 1.319807 1.315504 -0.012616315 -0.51963657 0.031697739 1.900107 4 1.319952 1.315653 0.044677399 2.79329483 0.031643028 3.625663 6 1.321243 1.317083 0.013662510 1.08151652 0.013931893 1.083522 7 1.321565 1.317304 0.005302981 0.00551776 0.016494509 1.351466 8 1.321874 1.317630 0.008443039 2.91067239 0.021985980 3.773115 10 1.322451 1.318375 -0.008290611 0.21758483 0.020623052 2.520822 11 1.322702 1.318669 -0.025142433 -0.88271693 0.065533899 5.160644 13 1.324342 1.320431 0.015185437 0.26207505 0.028691435 2.177104 14 1.324213 1.320326 0.002211661 -0.95369900 0.020877872 4.055407 15 1.324671 1.320777 0.051252705 -1.06454664 0.036283417 1.998402 16 1.324660 1.320738 -0.002092981 -1.07669642 0.006569915 1.465178 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 384.461 co2l1 = 0.351 co2l0 = 0.201" [1] "co2l0 = -131.23 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "78 out of 140 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "62 out of 1204 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "62 out of 1204 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"