[1] "2017-04-06 00:10:24 MDT"
[1] "1304"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1304/130414.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1304/130415.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1304/130416.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1304/130417.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1304/130418.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1304/130419.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1304/130420.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1304/130421.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1304/130422.html"  
[10] "/net/www/docs/homes/stephens/GO2/1304/130423.html"  
[11] "/net/www/docs/homes/stephens/GO2/1304/130424.html"  
[12] "/net/www/docs/homes/stephens/GO2/1304/130425.html"  
[13] "/net/www/docs/homes/stephens/GO2/1304/130426.html"  
[14] "/net/www/docs/homes/stephens/GO2/1304/130427.html"  
[15] "/net/www/docs/homes/stephens/GO2/1304/130428.html"  
[16] "/net/www/docs/homes/stephens/GO2/1304/130429.html"  
[17] "/net/www/docs/homes/stephens/GO2/1304/130430.html"  
[18] "/net/www/docs/homes/stephens/GO2/1304/130501.html"  
[19] "/net/www/docs/homes/stephens/GO2/1304/130502.html"  
[20] "/net/www/docs/homes/stephens/GO2/1304/130503.html"  
[21] "/net/www/docs/homes/stephens/GO2/1304/130504.html"  
[22] "/net/www/docs/homes/stephens/GO2/1304/130505.html"  
[23] "/net/www/docs/homes/stephens/GO2/1304/lmg_1304.html"
 [1] "/net/www/docs/homes/stephens/GO2/1304/130414.html"
 [2] "/net/www/docs/homes/stephens/GO2/1304/130415.html"
 [3] "/net/www/docs/homes/stephens/GO2/1304/130416.html"
 [4] "/net/www/docs/homes/stephens/GO2/1304/130417.html"
 [5] "/net/www/docs/homes/stephens/GO2/1304/130418.html"
 [6] "/net/www/docs/homes/stephens/GO2/1304/130419.html"
 [7] "/net/www/docs/homes/stephens/GO2/1304/130420.html"
 [8] "/net/www/docs/homes/stephens/GO2/1304/130421.html"
 [9] "/net/www/docs/homes/stephens/GO2/1304/130422.html"
[10] "/net/www/docs/homes/stephens/GO2/1304/130423.html"
[11] "/net/www/docs/homes/stephens/GO2/1304/130424.html"
[12] "/net/www/docs/homes/stephens/GO2/1304/130425.html"
[13] "/net/www/docs/homes/stephens/GO2/1304/130426.html"
[14] "/net/www/docs/homes/stephens/GO2/1304/130427.html"
[15] "/net/www/docs/homes/stephens/GO2/1304/130428.html"
[16] "/net/www/docs/homes/stephens/GO2/1304/130429.html"
[17] "/net/www/docs/homes/stephens/GO2/1304/130430.html"
[18] "/net/www/docs/homes/stephens/GO2/1304/130501.html"
[19] "/net/www/docs/homes/stephens/GO2/1304/130502.html"
[20] "/net/www/docs/homes/stephens/GO2/1304/130503.html"
[21] "/net/www/docs/homes/stephens/GO2/1304/130504.html"
[22] "/net/www/docs/homes/stephens/GO2/1304/130505.html"
[1] "130414" "130505"
 [1] "130414" "130415" "130416" "130417" "130418" "130419" "130420" "130421"
 [9] "130422" "130423" "130424" "130425" "130426" "130427" "130428" "130429"
[17] "130430" "130501" "130502" "130503" "130504" "130505"
[1] "000000" "999999"
[1] "130414_mr_proc.txt, 130414_cal_periods.txt, 130414_cal_param.txt,1jogs"
[1] "130415_mr_proc.txt, 130415_cal_periods.txt, 130415_cal_param.txt,528jogs"
[1] "130416_mr_proc.txt, 130416_cal_periods.txt, 130416_cal_param.txt,1362jogs"
[1] "130417_mr_proc.txt, 130417_cal_periods.txt, 130417_cal_param.txt,1301jogs"
[1] "130418_mr_proc.txt, 130418_cal_periods.txt, 130418_cal_param.txt,65jogs"
[1] "130419_mr_proc.txt, 130419_cal_periods.txt, 130419_cal_param.txt,1332jogs"
[1] "130420_mr_proc.txt, 130420_cal_periods.txt, 130420_cal_param.txt,1247jogs"
[1] "130421_mr_proc.txt, 130421_cal_periods.txt, 130421_cal_param.txt,1238jogs"
[1] "130422_mr_proc.txt, 130422_cal_periods.txt, 130422_cal_param.txt,1223jogs"
[1] "130423_mr_proc.txt, 130423_cal_periods.txt, 130423_cal_param.txt,1351jogs"
[1] "130424_mr_proc.txt, 130424_cal_periods.txt, 130424_cal_param.txt,927jogs"
[1] "130425_mr_proc.txt, 130425_cal_periods.txt, 130425_cal_param.txt,1290jogs"
[1] "130426_mr_proc.txt, 130426_cal_periods.txt, 130426_cal_param.txt,1087jogs"
[1] "130427_mr_proc.txt, 130427_cal_periods.txt, 130427_cal_param.txt,554jogs"
[1] "130428_mr_proc.txt, 130428_cal_periods.txt, 130428_cal_param.txt,1079jogs"
[1] "130429_mr_proc.txt, 130429_cal_periods.txt, 130429_cal_param.txt,1167jogs"
[1] "130430_mr_proc.txt, 130430_cal_periods.txt, 130430_cal_param.txt,1426jogs"
[1] "130501_mr_proc.txt, 130501_cal_periods.txt, 130501_cal_param.txt,1403jogs"
[1] "130502_mr_proc.txt, 130502_cal_periods.txt, 130502_cal_param.txt,1249jogs"
[1] "130503_mr_proc.txt, 130503_cal_periods.txt, 130503_cal_param.txt,1178jogs"
[1] "130504_mr_proc.txt, 130504_cal_periods.txt, 130504_cal_param.txt,1420jogs"
[1] "130505_mr_proc.txt, 130505_cal_periods.txt, 130505_cal_param.txt,93jogs"
[1] "130414" "130505" "d104"   "d125"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 00:11:11 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.767, ave o2scale2 = 0.769"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 00:11:31 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 00:12:02 MDT"
[1] "2017-04-06 00:12:09 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -453.6"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.78 O2 = -549.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -632.7"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.89 O2 = -579"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1304 Valve transient for  Line 2 after Line 1 = 0.33 , 0.34 , 0.42 , 0.49 , 0.48 n = 2"
[1] "1304 Valve transient for  Line 2 after Cal = 0 , 0.04 , 0.05 , 0.06 , 0.1 n = 82"
[1] "1304 Valve transient for  Line 2 after HS = -2.67 , -1.33 , -0.06 , -0.03 , 0.01 n = 29"
[1] "1304 Valve transient for  Line 2 after MS = 0.42 , 0.18 , 0.04 , 0.02 , 0.07 n = 37"
[1] "1304 Valve transient for  Line 2 after LT = -1.55 , -1.11 , 1.39 , 2.47 , 2.48 n = 16"
[1] "1304 Valve transient for  HS after Line 2 = 1.16 , 0.59 , 0 , 0 , 0 n = 21"
[1] "1304 Valve transient for  HS after LS = 5.37 , 2.7 , 0.02 , 0.01 , 0 n = 28"
[1] "1304 Valve transient for  MS after LS = 1.75 , 0.88 , 0 , 0 , 0 n = 16"
[1] "1304 Valve transient for  MS after LT = 0.79 , 0.39 , -0.01 , -0.01 , 0 n = 7"
[1] "1304 Valve transient for  LS after Line 1 = 0 , 0 , NA , NA , NA n = 1"
[1] "1304 Valve transient for  LS after Line 2 = -1.84 , -0.92 , 0 , 0 , 0 n = 22"
[1] "1304 Valve transient for  LS after HS = -5.17 , -2.59 , -0.02 , 0 , 0 n = 26"
[1] "1304 Valve transient for  LT after Line 1 = 0.07 , 0.07 , 0.06 , 0.02 , 0 n = 1"
[1] "1304 Valve transient for  LT after HS = -1.63 , -0.75 , 0.07 , 0.06 , 0.08 n = 8"
[1] "1304 Valve transient for  LT after LS = 1.86 , 1.02 , 0.11 , 0.09 , 0.09 n = 6"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "403 out of 4020 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "3617 out of 19540 1-min values rejected as stack air"
[1] "0 out of 0 Line 1 1-min values rejected as stack air"
[1] "3617 out of 19540 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1304loxy.d103"
[1] "LMG1304loxy.d104"
[1] "LMG1304loxy.d105"
[1] "LMG1304loxy.d106"
[1] "LMG1304loxy.d107"
[1] "LMG1304loxy.d108"
[1] "LMG1304loxy.d111"
[1] "LMG1304loxy.d112"
[1] "LMG1304loxy.d113"
[1] "LMG1304loxy.d114"
[1] "LMG1304loxy.d115"
[1] "LMG1304loxy.d116"
[1] "LMG1304loxy.d117"
[1] "LMG1304loxy.d118"
[1] "LMG1304loxy.d119"
[1] "LMG1304loxy.d122"
[1] "LMG1304loxy.d123"
[1] "LMG1304loxy.d124"
[1] "LMG1304loxy.d125"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.2444988
 [2,]  97.5 0.0000000
 [3,] 102.5 0.2444988
 [4,] 107.5 0.4889976
 [5,] 112.5 0.3667482
 [6,] 117.5 0.4889976
 [7,] 122.5 0.6112469
 [8,] 127.5 0.3667482
 [9,] 132.5 1.2224939
[10,] 137.5 0.3667482
[11,] 142.5 0.3667482
[12,] 147.5 0.1222494
[13,] 152.5 0.2444988
[14,] 162.5 0.2444988
[15,] 172.5 0.1222494
[16,] 177.5 0.1222494
[17,] 182.5 0.2444988
[18,] 187.5 0.2444988
[19,] 192.5 0.1222494
[20,] 197.5 0.2444988
[21,] 202.5 0.2444988
[22,] 217.5 0.1222494
[23,] 222.5 0.3667482
[24,] 227.5 0.6112469
[25,] 232.5 1.1002445
[26,] 237.5 0.3667482
[27,] 242.5 0.7334963
[28,] 247.5 0.8557457
[29,] 252.5 0.7334963
[30,] 257.5 0.3667482
[31,] 262.5 0.2444988
[32,] 267.5 0.4889976
[33,] 272.5 0.1222494
[34,] 277.5 0.3667482
[35,] 282.5 0.3667482
[36,] 287.5 0.1222494
[37,] 292.5 0.4889976
[38,] 297.5 0.6112469
[39,] 302.5 0.9779951
[40,] 307.5 1.1002445
[41,] 312.5 1.3447433
[42,] 317.5 1.7114914
[43,] 322.5 1.3447433
[44,] 327.5 1.8337408
[45,] 332.5 0.9779951
[46,] 337.5 0.3667482
[47,] 342.5 0.6112469
[48,] 347.5 0.7334963
[49,] 352.5 0.3667482
[50,] 357.5 0.1222494
[51,] 362.5 0.1222494
[52,] 367.5 0.1222494
[53,] 372.5 0.3667482
[54,] 377.5 0.1222494
[55,] 382.5 0.1222494
[56,] 387.5 0.2444988
[57,] 392.5 0.3667482
[58,] 397.5 0.1222494
[59,] 402.5 0.2444988
[60,] 407.5 0.1222494
[61,] 412.5 0.3667482
[62,] 417.5 0.1222494
[63,] 422.5 0.3667482
[64,] 427.5 0.2444988
[65,] 432.5 0.4889976
[66,] 447.5 0.3667482
       [,1]      [,2]
 [1,]  97.5 0.1222494
 [2,] 102.5 0.2444988
 [3,] 152.5 0.1222494
 [4,] 172.5 0.3667482
 [5,] 177.5 0.8557457
 [6,] 182.5 0.6112469
 [7,] 187.5 0.3667482
 [8,] 192.5 0.1222494
 [9,] 202.5 0.7334963
[10,] 207.5 0.3667482
[11,] 212.5 0.2444988
[12,] 217.5 0.2444988
[13,] 222.5 1.2224939
[14,] 227.5 1.5892421
[15,] 232.5 0.4889976
[16,] 237.5 1.1002445
[17,] 242.5 1.8337408
[18,] 247.5 0.8557457
[19,] 252.5 1.1002445
[20,] 257.5 0.8557457
[21,] 262.5 0.7334963
[22,] 267.5 0.8557457
[23,] 272.5 1.3447433
[24,] 277.5 1.2224939
[25,] 282.5 0.4889976
[26,] 287.5 0.1222494
[27,] 292.5 0.4889976
[28,] 297.5 0.6112469
[29,] 302.5 0.4889976
[30,] 312.5 0.2444988
[31,] 317.5 0.7334963
[32,] 322.5 0.8557457
[33,] 327.5 0.6112469
[34,] 332.5 0.6112469
[35,] 337.5 0.3667482
[36,] 342.5 0.6112469
[37,] 347.5 1.8337408
[38,] 352.5 1.2224939
[39,] 357.5 0.2444988
[40,] 362.5 0.7334963
[41,] 367.5 0.9779951
[42,] 372.5 0.3667482
[43,] 377.5 0.1222494
[44,] 382.5 0.2444988
[45,] 387.5 0.1222494
[46,] 392.5 0.1222494
[47,] 397.5 0.1222494
[48,] 432.5 0.0000000
       [,1]      [,2]
 [1,] 207.5 0.1222494
 [2,] 217.5 0.1222494
 [3,] 227.5 0.1222494
 [4,] 242.5 0.2444988
 [5,] 252.5 0.2444988
 [6,] 272.5 0.1222494
 [7,] 282.5 0.1222494
 [8,] 287.5 0.7334963
 [9,] 292.5 1.2224939
[10,] 297.5 1.1002445
[11,] 302.5 0.4889976
[12,] 307.5 0.6112469
[13,] 312.5 0.4889976
[14,] 317.5 1.9559902
[15,] 322.5 2.5672372
[16,] 327.5 2.4449878
[17,] 332.5 0.7334963
[18,] 337.5 2.0782396
[19,] 342.5 4.1564792
[20,] 347.5 2.3227384
[21,] 352.5 1.1002445
[22,] 357.5 0.8557457
[23,] 362.5 1.4669927
[24,] 367.5 3.0562347
[25,] 372.5 0.6112469
[26,] 377.5 0.7334963
[27,] 382.5 0.1222494
[28,] 402.5 0.1222494
       [,1]      [,2]
 [1,] 292.5 0.1222494
 [2,] 302.5 0.2444988
 [3,] 307.5 0.3667482
 [4,] 322.5 0.1222494
 [5,] 332.5 0.3667482
 [6,] 337.5 0.9779951
 [7,] 342.5 0.9779951
 [8,] 347.5 0.3667482
 [9,] 352.5 0.1222494
[10,] 357.5 0.3667482
[11,] 362.5 0.1222494
[12,] 367.5 0.8557457
[13,] 372.5 0.7334963
[14,] 377.5 0.3667482
[15,] 382.5 1.1002445
[16,] 387.5 1.2224939
[17,] 392.5 1.2224939
[18,] 397.5 0.1222494
[1] "making cruise html"
[1] "2017-04-06 00:12:56 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"