[1] "2025-04-29 18:24:56 MDT" [1] "1303" "130406" "d096" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130406a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85597 63 [1] 85597 [1] 85597 [1] "testing skipping spike filter" [1] 85597 [1] 85597 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:25:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.775" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "658 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.775" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "660 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:25:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:25:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:25:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:25:13 MDT" [1] "reading in recalculated plot titles" [1] "Removed 660 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 765 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:25:21 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.278 co2off = 395.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 4.01 minutes" [1] "Average Cal: 4.1 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 7 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 2 [3,] 3 4 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 36 43 0.02938145 0.0342500 0.03251116 1 -27.24914 206.99785 5 4 175 182 0.23878278 0.2443503 0.24214790 1 84.78981 47.03035 9 2 354 358 0.44747801 0.4509553 0.45002812 2 -23.16481 198.93761 10 4 359 362 0.45512853 0.4579106 0.45756288 2 85.11697 55.29364 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.292291 1.284365 -0.023989297 -3.037628e-01 0.045606185 1.593670 5 1.291179 1.283152 -0.002397865 -1.038398e+00 0.011491097 5.879246 9 1.295252 1.287526 -0.007556827 -1.818422e+00 0.012320112 2.943591 10 1.296073 1.288335 0.003557756 4.653558e-15 0.002519068 0.000000 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.369 co2l1 = 0.286 co2l0 = 0" [1] "co2l0 = -126.74 co2l1 = 0.249" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "30 out of 35 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "5 out of 663 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "5 out of 663 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"