[1] "2025-04-29 18:21:51 MDT" [1] "1303" "130329" "d088" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130329a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 38250 63 [1] 38250 [1] 38250 [1] "testing skipping spike filter" [1] 38250 [1] 38250 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:21:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.776, ave o2scale2 = 0.783" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.776, ave o2scale2 = 0.783" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:21:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:21:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:22:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:22:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 4 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 633 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:22:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.397 co2off = 376.82 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 45 54 0.03178475 0.03805162 0.03561661 2 72.299680 42.69251 3 2 55 64 0.03874711 0.04500694 0.04257230 2 -5.823438 205.23049 4 5 65 74 0.04570255 0.05196224 0.05091925 NA 37.328375 97.65319 6 2 342 351 0.24054251 0.24680556 0.24437118 3 -5.764219 205.89220 7 4 352 361 0.24750116 0.25376395 0.25132896 3 72.345492 45.60922 8 3 362 371 0.25445949 0.26072222 0.25967901 3 45.459820 118.53956 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.288252 1.277455 -0.0050337745 -0.07359697 0.012693346 1.557888 3 1.288447 1.277650 -0.0104545933 -0.29078919 0.026536279 2.070530 4 1.288307 1.277511 0.0579348233 -1.69332355 0.041012193 2.217520 6 1.288766 1.277944 -0.0212462561 0.18905017 0.052228336 1.419669 7 1.288605 1.277796 0.0122452921 0.50716917 0.031860596 1.626543 8 1.288675 1.277880 -0.0005594495 1.53187501 0.007062495 2.220950 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 376.651 co2l1 = 0.397 co2l0 = 0.021" [1] "co2l0 = -122.23 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "56 out of 111 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "55 out of 541 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "55 out of 541 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"