[1] "2025-04-29 18:21:11 MDT" [1] "1303" "130328" "d087" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130328a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:21:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.781" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "105 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.781" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "105 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:21:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:21:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:21:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:21:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 105 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1329 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:21:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.394 co2off = 382.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.85 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 3 1 9 0.001827865 0.007392361 0.006696701 1 45.138518 115.34346 3 4 251 259 0.195950926 0.202210851 0.199627749 2 72.528678 47.69290 4 2 260 269 0.202906250 0.209169271 0.206734946 2 -6.955398 206.06361 6 2 547 556 0.404774306 0.411036979 0.408602246 3 -6.405172 204.71028 7 4 557 566 0.411732350 0.417998843 0.415562410 3 72.320727 46.03599 8 5 567 576 0.418694444 0.424962413 0.423918844 NA 37.177250 97.06244 9 3 577 584 0.425660880 0.431225347 0.430877648 3 45.258308 119.45616 11 4 804 812 0.613602199 0.619861574 0.617775289 2 72.268255 45.39278 12 2 813 822 0.620556973 0.626816580 0.624382556 2 -6.273500 204.95359 14 2 1075 1084 0.822834288 0.829106481 0.826667271 3 -6.318312 204.34837 15 4 1085 1094 0.829802083 0.836066233 0.833630917 3 72.366367 45.60355 16 3 1095 1104 0.836766262 0.843026013 0.841982588 3 45.353414 119.66730 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.300692 1.290027 -0.0009827771 -0.3033653 0.006348465 0.571149 3 1.297718 1.286950 -0.0068742458 0.7480684 0.017867111 2.117684 4 1.297793 1.287041 0.0011002620 -0.1549013 0.018011930 1.557370 6 1.292128 1.281105 -0.0067453773 0.4354720 0.017746785 5.360002 7 1.291746 1.280722 -0.0011436298 0.5299548 0.014373872 1.912386 8 1.291621 1.280601 0.0523451456 -2.1218562 0.037123106 3.000382 9 1.291420 1.280406 -0.0010797255 2.3124726 0.005186754 1.637413 11 1.288406 1.277234 0.0003237764 -0.3422544 0.006931401 1.720742 12 1.288670 1.277496 0.0042885839 0.3816889 0.015722695 3.763195 14 1.287264 1.276156 -0.0049288258 -0.3667631 0.015581869 1.294592 15 1.287162 1.276068 0.0074076930 0.4141435 0.019288558 1.365477 16 1.287229 1.276137 0.0010156146 3.1882599 0.005522068 4.219490 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 376.99 co2l1 = 0.393 co2l0 = 0.027" [1] "co2l0 = -122.83 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "117 out of 760 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "643 out of 1174 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "643 out of 1174 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"