[1] "2025-04-29 18:20:49 MDT" [1] "1303" "130327" "d086" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130327a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 73680 63 [1] 73680 [1] 73680 [1] "testing skipping spike filter" [1] 73680 [1] 73680 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:20:52 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.777" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with SP SD > 1000" [1] "158 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.77, ave o2scale2 = 0.777" [1] "Removing 2 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with SP SD > 1000" [1] "158 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:20:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:20:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:21:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:21:02 MDT" [1] "reading in recalculated plot titles" [1] "Removed 158 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 5 row(s) with variable TFCELL" [1] "TEMP: 1064 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:21:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.391 co2off = 382.3 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.84 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 231 240 0.3612112 0.3674711 0.3650367 2 72.225570 47.65361 4 2 241 250 0.3681665 0.3744294 0.3719950 2 -6.948820 205.37399 6 2 503 512 0.5699480 0.5762089 0.5737734 3 -6.731711 202.95208 7 4 513 522 0.5769065 0.5831655 0.5807316 3 72.220031 45.19280 8 3 523 532 0.5838639 0.5901308 0.5890876 3 45.024844 117.71440 10 4 763 769 0.7786763 0.7849397 0.7822944 2 72.574736 44.29943 11 2 770 779 0.7856351 0.7918981 0.7894614 2 -7.483195 203.90041 12 5 780 789 0.7925936 0.7988563 0.7978113 NA 36.673781 99.53880 14 2 1048 1055 0.9872153 0.9934786 0.9912763 2 -7.479302 206.77545 15 4 1056 1064 0.9941740 0.9997417 0.9976542 2 72.642714 48.32510 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.296201 1.284610 0.0039233112 -0.2252456 0.009936261 1.674034 4 1.296256 1.284681 -0.0027525286 -0.2377774 0.008816864 1.300002 6 1.298732 1.287588 -0.0164060836 -0.6105643 0.040435671 2.798864 7 1.298767 1.287649 0.0152036930 0.1475487 0.038438161 4.110720 8 1.298822 1.287722 -0.0035698997 0.0795238 0.014229544 1.202210 10 1.301067 1.290239 0.0040010837 0.5722357 0.012568945 2.372279 11 1.301267 1.290436 -0.0017368464 -0.6127297 0.014418120 2.536249 12 1.301251 1.290411 0.0623491720 -2.2133775 0.044149980 2.940565 14 1.301014 1.290308 0.0001946481 0.6145364 0.003172001 3.220796 15 1.301009 1.290308 0.0082178046 0.5738242 0.022946463 1.420508 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.123 co2l1 = 0.39 co2l0 = 0.034" [1] "co2l0 = -122.88 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "72 out of 165 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "93 out of 908 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "93 out of 908 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"