[1] "2025-04-29 18:20:15 MDT" [1] "1303" "130326" "d085" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130326a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 69175 63 [1] 69175 [1] 69175 [1] "testing skipping spike filter" [1] 69175 [1] 69175 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:20:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.786" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "67 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.786" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "67 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:20:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:20:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:20:33 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:20:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 68 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1084 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:20:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.4 co2off = 382.1 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.77 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 11 20 0.008048322 0.01431256 0.01187590 3 -5.425578 208.15610 3 4 21 30 0.015008102 0.02127086 0.01883577 3 71.458328 46.83385 5 3 39 48 0.028935127 0.03519566 0.03415257 3 45.019078 118.71867 7 4 304 313 0.216841059 0.22310382 0.22066836 2 71.630047 44.02742 8 2 314 323 0.223799132 0.23006186 0.22762703 2 -5.865477 204.06644 10 2 603 612 0.425607870 0.43186690 0.42943301 3 -6.078711 204.42722 11 4 613 622 0.432566262 0.43882538 0.43639140 3 71.764641 46.84415 12 3 623 632 0.439520833 0.44578374 0.44474058 3 45.001773 121.69892 14 4 880 885 0.634373727 0.64063657 0.63889691 2 71.941953 46.17957 15 2 886 892 0.641332205 0.64550856 0.64411552 2 -6.317275 204.34162 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.282047 1.272728 -0.0118224218 0.09382665 0.030173323 3.344997 3 1.281767 1.272448 0.0088194089 -0.10218877 0.022804090 1.178976 5 1.282090 1.272800 0.0009181797 -1.58228394 0.002608954 2.265520 7 1.281883 1.272580 -0.0060819038 1.20150574 0.016745327 4.192144 8 1.281583 1.272235 -0.0031592004 0.33217035 0.017645281 1.745740 10 1.282433 1.272467 -0.0061898052 -0.50741206 0.016742634 4.426206 11 1.282459 1.271981 0.0137111892 2.00680987 0.035320973 7.228216 12 1.282421 1.271330 0.0036933118 5.33678469 0.009674383 7.194084 14 1.284899 1.273275 0.0015748453 0.42732654 0.005181441 1.339596 15 1.284939 1.273373 -0.0067764139 -0.19365165 0.013677622 1.402269 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 376.716 co2l1 = 0.4 co2l0 = 0.022" [1] "co2l0 = -122.8 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "122 out of 332 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "210 out of 927 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "210 out of 927 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"