[1] "2025-04-29 18:19:36 MDT" [1] "1303" "130325" "d084" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130325a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:19:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "273 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "273 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:19:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:19:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:19:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:20:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 273 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1161 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:20:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.396 co2off = 361.49 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.29 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 10.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 241 246 0.1730034 0.1764804 0.1754373 3 -7.115703 206.18634 3 4 247 255 0.1799583 0.1862176 0.1837337 3 72.032391 49.54631 4 3 256 265 0.1869131 0.1931727 0.1921296 3 44.866984 115.89298 6 4 452 459 0.3824409 0.3880081 0.3861533 2 71.820570 46.90997 7 2 460 469 0.3887037 0.3949633 0.3925291 2 -6.638805 204.58491 8 5 470 479 0.3956587 0.4019218 0.4008788 NA 36.664062 98.86359 11 4 660 664 0.5981493 0.6009312 0.6002358 2 71.752854 44.82002 12 3 665 672 0.6044121 0.6092841 0.6089364 2 44.810500 114.65091 14 4 889 898 0.7992327 0.8054954 0.8030607 2 71.636547 45.18823 15 2 899 907 0.8061910 0.8131459 0.8099831 2 -5.786507 188.52719 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.301223 1.293059 0.0004431774 4.864534050 0.001972054 6.4922629 3 1.301143 1.292996 0.0044282478 0.002845726 0.017840313 0.8033915 4 1.300960 1.292812 -0.0017531716 1.711128178 0.010451031 2.3056748 6 1.295385 1.286963 -0.0010906780 0.320929270 0.004731393 1.7680207 7 1.295295 1.286872 -0.0090855815 0.859277078 0.024457996 3.8754073 8 1.294976 1.286542 0.0493092543 0.734906851 0.034913397 2.0161913 11 1.288569 1.279801 0.0064293355 4.488922689 0.006457292 4.4958370 12 1.288727 1.279935 0.0096452652 -2.192446711 0.019750277 1.5525548 14 1.283595 1.274509 0.0024339507 -0.209269717 0.009127431 1.7462791 15 1.283466 1.274308 0.0025166072 -8.195412144 0.018571528 26.1128323 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.118 co2l1 = 0.393 co2l0 = 0.035" [1] "co2l0 = -123.13 co2l1 = 0.233" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "134 out of 717 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "583 out of 1027 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "583 out of 1027 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"