[1] "2025-04-29 18:18:38 MDT" [1] "1303" "130323" "d082" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130323a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 49314 63 [1] 49314 [1] 49314 [1] "testing skipping spike filter" [1] 49314 [1] 49314 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:18:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.765, ave o2scale2 = 0.769" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "221 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.765, ave o2scale2 = 0.769" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "221 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:18:40 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:18:40 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:18:45 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:18:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 221 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 4 row(s) with variable TFCELL" [1] "TEMP: 595 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:18:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.392 co2off = 372.55 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.03 minutes" [1] "Average Cal: 7.15 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 6 4 245 250 0.7135952 0.7170742 0.7160299 2 71.718203 53.28725 7 2 251 259 0.7177720 0.7240348 0.7214490 2 -7.578960 203.63502 9 2 491 499 0.9210611 0.9266374 0.9245458 3 -7.291545 206.71900 10 4 500 509 0.9273347 0.9336101 0.9311697 3 71.757617 54.65366 11 3 510 519 0.9343079 0.9405955 0.9395488 3 44.603094 124.82946 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 6 1.307332 1.301130 0.004508426 8.611911 0.005960455 11.574079 7 1.307502 1.301314 -0.003421484 -2.257504 0.013242683 11.360453 9 1.308594 1.300832 0.015548417 1.417581 0.034913150 5.766595 10 1.308367 1.300621 -0.003726457 5.729688 0.018634628 17.539189 11 1.308530 1.300805 -0.006569696 -1.393167 0.017566932 2.084368 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.261 co2l1 = 0.392 co2l0 = 0.039" [1] "co2l0 = -125.26 co2l1 = 0.237" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "19 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "6 out of 483 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "6 out of 483 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"