[1] "2025-04-29 18:16:43 MDT" [1] "1303" "130317" "d076" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130317a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:16:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.765, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "19 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.765, ave o2scale2 = 0.771" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "19 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:16:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:16:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:17:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:17:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1415 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:17:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.395 co2off = 377.73 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.56 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 260 269 0.1822134 0.1884762 0.1860421 2 -8.535023 205.02565 3 4 270 279 0.1891755 0.1954387 0.1930012 2 70.179648 45.91019 6 4 552 561 0.3909571 0.3972234 0.3947884 2 70.198945 45.97848 7 2 562 571 0.3979190 0.4041818 0.4017478 2 -8.898766 205.20581 8 5 572 581 0.4048803 0.4111435 0.4100978 NA 33.491281 97.28283 10 2 852 861 0.5997146 0.6059775 0.6035434 3 -8.524008 202.84503 11 4 862 871 0.6066729 0.6129326 0.6104983 3 70.172898 47.08982 12 3 872 881 0.6136280 0.6198910 0.6188478 3 43.146953 117.30447 14 4 1144 1152 0.8077523 0.8133194 0.8112314 2 70.127661 44.66272 15 2 1153 1161 0.8140150 0.8195843 0.8174950 2 -8.160634 206.95029 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.311883 1.301955 -0.001753963 0.25686541 0.006317929 1.6518807 3 1.311645 1.301708 0.003956035 -0.65097889 0.015381892 3.4061616 6 1.308824 1.298755 -0.000392278 0.71777816 0.007177395 2.3587614 7 1.308745 1.298680 -0.014097951 0.63082908 0.036397817 1.7865722 8 1.308589 1.298519 0.076481796 -1.03945066 0.054403028 1.5210648 10 1.305891 1.295599 0.000398946 -0.27010495 0.002793774 2.3866899 11 1.305931 1.295648 0.002976894 0.09132097 0.017712641 0.5625866 12 1.305975 1.295700 0.006094830 1.38768727 0.019390741 2.4161018 14 1.302582 1.292090 0.006613464 -1.12968976 0.015100654 2.7141484 15 1.302550 1.292013 -0.013881442 -0.07355601 0.031763109 2.3548934 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.691 co2l1 = 0.394 co2l0 = 0.054" [1] "co2l0 = -122.72 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "17 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "8 out of 1263 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "8 out of 1263 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"