[1] "2025-04-29 18:16:13 MDT" [1] "1303" "130316" "d075" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130316a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85046 63 [1] 85046 [1] 85046 [1] "testing skipping spike filter" [1] 85046 [1] 85046 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:16:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.763, ave o2scale2 = 0.769" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "33 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.763, ave o2scale2 = 0.769" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "33 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:16:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:16:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:16:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:16:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 33 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1383 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:16:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.394 co2off = 373.1 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.74 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 221 228 0.1538262 0.1600891 0.1578855 3 -8.372719 205.16535 3 4 229 238 0.1607847 0.1670475 0.1646134 3 69.685305 47.81513 4 3 239 248 0.1677465 0.1740097 0.1729646 3 42.882555 116.84335 6 4 519 528 0.3626159 0.3688792 0.3664423 2 69.872953 45.09489 7 2 529 538 0.3695746 0.3758345 0.3733998 2 -8.725617 204.54305 8 5 539 548 0.3765301 0.3827928 0.3817481 NA 33.475344 95.42465 10 2 819 828 0.5715661 0.5778405 0.5753997 3 -9.071312 206.67715 11 4 829 838 0.5785372 0.5848113 0.5823707 3 70.179227 47.14481 12 3 839 848 0.5855081 0.5917786 0.5907339 3 42.968344 114.97844 14 2 1066 1072 0.7732801 0.7781551 0.7763443 2 -8.725877 209.14898 15 4 1073 1082 0.7788525 0.7851213 0.7826846 2 70.194422 43.91414 18 4 1346 1355 0.9734221 0.9796933 0.9772535 2 70.234055 44.63999 19 2 1356 1365 0.9803900 0.9866632 0.9842239 2 -8.751250 206.78945 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.303200 1.292071 0.0013783906 -0.11176997 0.017928624 1.1964560 3 1.303419 1.292308 0.0066938310 0.45730309 0.021079183 2.6220657 4 1.303520 1.292409 0.0048462953 -2.16158636 0.012723775 2.8556330 6 1.310464 1.299704 -0.0044605945 -0.72343663 0.011679392 2.4617117 7 1.310875 1.300150 -0.0182696046 0.01542253 0.045635498 1.6224463 8 1.310945 1.300247 0.0587195274 -0.07290008 0.041586718 0.8272653 10 1.314872 1.304386 -0.0050770768 0.34541062 0.015421532 2.2989371 11 1.314859 1.304375 0.0075775703 0.50609386 0.020994258 2.2689492 12 1.314829 1.304339 0.0025718916 -0.52992524 0.009599747 0.9155672 14 1.317890 1.308240 0.0052236770 0.39634411 0.013109310 1.7201863 15 1.318005 1.308429 -0.0004197882 -1.25923633 0.015640055 3.5674584 18 1.315860 1.306176 -0.0007407071 -0.55483155 0.004117883 1.7339696 19 1.315872 1.306199 -0.0061132024 -1.03313997 0.020296848 3.3702981 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.778 co2l1 = 0.394 co2l0 = 0.057" [1] "co2l0 = -122.49 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "66 out of 214 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "148 out of 1184 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "148 out of 1184 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"