[1] "2025-04-29 18:15:34 MDT" [1] "1303" "130315" "d074" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130315a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86040 63 [1] 86040 [1] 86040 [1] "testing skipping spike filter" [1] 86040 [1] 86040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:15:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.776" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "122 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.776" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "122 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:15:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:15:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:15:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:15:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 122 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1311 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:16:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.401 co2off = 383 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.45 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 135 140 0.1138814 0.1173607 0.1163176 2 69.264703 46.25508 3 2 141 149 0.1180562 0.1243192 0.1218326 2 -8.286016 201.62460 6 2 401 410 0.3198472 0.3261064 0.3236721 3 -7.973344 204.36068 7 4 411 420 0.3268018 0.3330648 0.3306303 3 69.191469 43.83309 8 3 421 430 0.3337603 0.3400231 0.3389798 3 42.711937 112.62322 10 4 691 697 0.5286139 0.5348773 0.5334846 2 69.322345 47.93506 11 2 698 706 0.5355810 0.5411470 0.5390604 2 -7.930732 206.15118 13 2 954 962 0.7369953 0.7425589 0.7404724 3 -8.051170 208.55835 14 4 963 972 0.7439496 0.7502119 0.7477755 3 69.242984 44.27824 15 5 973 982 0.7509085 0.7571713 0.7561266 NA 33.204563 95.15266 16 3 983 992 0.7578669 0.7641296 0.7630864 3 42.678516 112.91051 18 4 1233 1241 0.9450197 0.9505876 0.9485012 2 69.410375 46.43779 19 2 1242 1250 0.9512861 0.9568554 0.9547661 2 -8.035259 203.45970 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.310101 1.299448 0.0004930162 0.1687906 0.0006738706 0.5078566 3 1.309918 1.299308 -0.0056248812 -2.0627615 0.0250421536 6.2413430 6 1.302057 1.291020 0.0046270224 -0.4882947 0.0119262054 3.1688233 7 1.301880 1.290846 0.0080545273 0.2495748 0.0257090520 1.8014186 8 1.301493 1.290443 0.0043255449 4.2914517 0.0136779362 5.7670742 10 1.297778 1.286486 0.0108644721 2.9875681 0.0186663397 5.5712449 11 1.297608 1.286265 -0.0035438185 0.4380095 0.0211140786 1.9764491 13 1.293445 1.281937 -0.0125634243 -0.8345874 0.0285058408 2.0247876 14 1.292986 1.281428 0.0110306367 -0.2030137 0.0294992386 2.6057828 15 1.292833 1.281264 0.0752527143 -1.6214655 0.0532981736 2.1483193 16 1.292955 1.281397 0.0055324709 -0.7466392 0.0148362998 1.2677558 18 1.295889 1.284433 -0.0041563159 0.8398670 0.0090698964 2.4878118 19 1.296116 1.284725 -0.0069694170 0.5629683 0.0196185110 2.4852794 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 377.571 co2l1 = 0.401 co2l0 = 0.049" [1] "co2l0 = -122.55 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "108 out of 300 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "192 out of 1134 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "192 out of 1134 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"