[1] "2025-04-29 18:14:54 MDT" [1] "1303" "130314" "d073" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130314a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:14:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.755, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "215 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.755, ave o2scale2 = 0.761" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "217 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:14:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:14:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:15:17 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:15:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 217 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1219 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:15:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.391 co2off = 362.84 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.53 minutes" [1] "Average Cal: 6.87 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 89 96 0.06732410 0.07219980 0.07046116 3 -10.747458 207.60576 3 4 97 104 0.07428594 0.07915813 0.07741946 3 69.583375 49.56584 4 3 105 113 0.08194427 0.08751160 0.08681546 3 41.965143 113.79821 6 4 337 346 0.27607914 0.28233814 0.27990418 2 69.563484 45.23581 7 2 347 351 0.28303362 0.28581947 0.28512388 2 -10.475542 207.00334 9 2 595 598 0.48899413 0.49108050 0.49073271 3 -10.010719 206.40969 10 4 599 605 0.49178053 0.49595347 0.49456246 3 69.527675 45.77817 12 3 615 624 0.50569329 0.51195830 0.51091346 3 42.206625 115.31350 14 4 858 867 0.69352920 0.69979233 0.69735806 2 69.567453 44.62943 15 2 868 876 0.70048764 0.70674754 0.70426338 2 -9.846634 202.17039 17 2 1121 1125 0.90226293 0.90715341 0.90644339 2 -8.506844 206.40301 18 4 1126 1134 0.90925752 0.91552083 0.91333361 2 69.147179 44.57062 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.332604 1.322843 0.0039793989 -0.3946730 0.012067432 1.4131466 3 1.332017 1.322225 0.0028139185 -2.6183697 0.016377624 5.9260211 4 1.332383 1.322659 0.0029217747 0.1859174 0.009088162 0.3554255 6 1.329713 1.319965 0.0024221606 -0.5748324 0.006983219 2.4879399 7 1.329568 1.319711 -0.0209030662 1.8057607 0.023078106 1.8163912 9 1.324456 1.314500 -0.0010607762 1.4850204 0.000751301 1.0517743 10 1.324085 1.314096 0.0116690670 -0.4575233 0.019282815 1.4897294 12 1.323471 1.313453 0.0043141053 0.8699984 0.011863999 1.8635996 14 1.320524 1.310439 0.0004057555 0.7223674 0.007652231 2.3345302 15 1.320535 1.310489 -0.0078973586 0.2777379 0.025497592 2.7119221 17 1.316731 1.306497 0.0243596861 -1.6647451 0.025405520 1.6934593 18 1.317083 1.306773 -0.0110541990 0.2905737 0.033483587 3.1304704 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.213 co2l1 = 0.391 co2l0 = 0.074" [1] "co2l0 = -122.51 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "20 out of 387 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "367 out of 1072 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "367 out of 1072 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"