[1] "2025-04-29 18:13:23 MDT" [1] "1303" "130312" "d071" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130312a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:13:28 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.751, ave o2scale2 = 0.756" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "136 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.751, ave o2scale2 = 0.756" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "136 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:13:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:13:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:13:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:13:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 136 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1299 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:14:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.381 co2off = 383.47 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 8.28 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 244 252 0.1881751 0.1937426 0.1916552 2 69.26212 42.94795 4 2 253 261 0.1958288 0.2013934 0.1993067 2 -12.11427 208.63071 6 2 523 532 0.3971309 0.4033946 0.4009582 3 -12.16016 205.25872 7 4 533 542 0.4040901 0.4103530 0.4079169 3 69.28198 46.00266 8 3 543 552 0.4110495 0.4173124 0.4162691 3 41.30901 113.98097 10 4 790 797 0.6072665 0.6121345 0.6103961 2 69.33734 43.05237 11 2 798 806 0.6128299 0.6190926 0.6169066 2 -12.16825 204.42913 14 2 1060 1068 0.8145949 0.8201624 0.8180759 3 -12.16728 204.31805 15 4 1069 1077 0.8222489 0.8278131 0.8257268 3 69.46636 47.81683 16 3 1078 1086 0.8285084 0.8340726 0.8333772 3 41.33648 115.68170 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.327708 1.318417 -0.0009933796 -0.72461672 0.009618736 2.8697771 4 1.327906 1.318677 0.0102977620 0.97173470 0.023018751 3.1354127 6 1.331043 1.321880 -0.0008748483 1.01964712 0.007767621 3.5528744 7 1.331081 1.321903 0.0046616330 1.19464169 0.018266777 5.9192397 8 1.331226 1.322067 0.0058306541 0.80658856 0.015567481 2.3391081 10 1.334608 1.325732 0.0085434613 -0.42897147 0.016211722 1.7815550 11 1.334612 1.325689 -0.0087697922 0.07943474 0.028376636 1.3890310 14 1.335757 1.326906 -0.0006404150 1.29582361 0.009595250 2.9557046 15 1.337139 1.328417 0.0040741353 -0.06059180 0.009179823 0.8022517 16 1.337208 1.328432 0.0003320669 1.18385259 0.002423495 1.2560032 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.977 co2l1 = 0.381 co2l0 = 0.095" [1] "co2l0 = -122.3 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "114 out of 130 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "16 out of 1139 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "16 out of 1139 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"