[1] "2017-04-05 23:51:12 MDT"
[1] "1303"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1303/130311.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1303/130312.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1303/130313.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1303/130314.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1303/130315.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1303/130316.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1303/130317.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1303/130318.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1303/130320.html"  
[10] "/net/www/docs/homes/stephens/GO2/1303/130321.html"  
[11] "/net/www/docs/homes/stephens/GO2/1303/130322.html"  
[12] "/net/www/docs/homes/stephens/GO2/1303/130323.html"  
[13] "/net/www/docs/homes/stephens/GO2/1303/130324.html"  
[14] "/net/www/docs/homes/stephens/GO2/1303/130325.html"  
[15] "/net/www/docs/homes/stephens/GO2/1303/130326.html"  
[16] "/net/www/docs/homes/stephens/GO2/1303/130327.html"  
[17] "/net/www/docs/homes/stephens/GO2/1303/130328.html"  
[18] "/net/www/docs/homes/stephens/GO2/1303/130329.html"  
[19] "/net/www/docs/homes/stephens/GO2/1303/130330.html"  
[20] "/net/www/docs/homes/stephens/GO2/1303/130331.html"  
[21] "/net/www/docs/homes/stephens/GO2/1303/130401.html"  
[22] "/net/www/docs/homes/stephens/GO2/1303/130402.html"  
[23] "/net/www/docs/homes/stephens/GO2/1303/130403.html"  
[24] "/net/www/docs/homes/stephens/GO2/1303/130404.html"  
[25] "/net/www/docs/homes/stephens/GO2/1303/130405.html"  
[26] "/net/www/docs/homes/stephens/GO2/1303/130406.html"  
[27] "/net/www/docs/homes/stephens/GO2/1303/130407.html"  
[28] "/net/www/docs/homes/stephens/GO2/1303/lmg_1303.html"
 [1] "/net/www/docs/homes/stephens/GO2/1303/130311.html"
 [2] "/net/www/docs/homes/stephens/GO2/1303/130312.html"
 [3] "/net/www/docs/homes/stephens/GO2/1303/130313.html"
 [4] "/net/www/docs/homes/stephens/GO2/1303/130314.html"
 [5] "/net/www/docs/homes/stephens/GO2/1303/130315.html"
 [6] "/net/www/docs/homes/stephens/GO2/1303/130316.html"
 [7] "/net/www/docs/homes/stephens/GO2/1303/130317.html"
 [8] "/net/www/docs/homes/stephens/GO2/1303/130318.html"
 [9] "/net/www/docs/homes/stephens/GO2/1303/130320.html"
[10] "/net/www/docs/homes/stephens/GO2/1303/130321.html"
[11] "/net/www/docs/homes/stephens/GO2/1303/130322.html"
[12] "/net/www/docs/homes/stephens/GO2/1303/130323.html"
[13] "/net/www/docs/homes/stephens/GO2/1303/130324.html"
[14] "/net/www/docs/homes/stephens/GO2/1303/130325.html"
[15] "/net/www/docs/homes/stephens/GO2/1303/130326.html"
[16] "/net/www/docs/homes/stephens/GO2/1303/130327.html"
[17] "/net/www/docs/homes/stephens/GO2/1303/130328.html"
[18] "/net/www/docs/homes/stephens/GO2/1303/130329.html"
[19] "/net/www/docs/homes/stephens/GO2/1303/130330.html"
[20] "/net/www/docs/homes/stephens/GO2/1303/130331.html"
[21] "/net/www/docs/homes/stephens/GO2/1303/130401.html"
[22] "/net/www/docs/homes/stephens/GO2/1303/130402.html"
[23] "/net/www/docs/homes/stephens/GO2/1303/130403.html"
[24] "/net/www/docs/homes/stephens/GO2/1303/130404.html"
[25] "/net/www/docs/homes/stephens/GO2/1303/130405.html"
[26] "/net/www/docs/homes/stephens/GO2/1303/130406.html"
[27] "/net/www/docs/homes/stephens/GO2/1303/130407.html"
[1] "130311" "130407"
 [1] "130311" "130312" "130313" "130314" "130315" "130316" "130317" "130318"
 [9] "130320" "130321" "130322" "130323" "130324" "130325" "130326" "130327"
[17] "130328" "130329" "130330" "130331" "130401" "130402" "130403" "130404"
[25] "130405" "130406" "130407"
[1] "000000" "999999"
[1] "Output file empty for 130311"
[1] "130312_mr_proc.txt, 130312_cal_periods.txt, 130312_cal_param.txt,1299jogs"
[1] "130313_mr_proc.txt, 130313_cal_periods.txt, 130313_cal_param.txt,1184jogs"
[1] "130314_mr_proc.txt, 130314_cal_periods.txt, 130314_cal_param.txt,1219jogs"
[1] "130315_mr_proc.txt, 130315_cal_periods.txt, 130315_cal_param.txt,1311jogs"
[1] "130316_mr_proc.txt, 130316_cal_periods.txt, 130316_cal_param.txt,1383jogs"
[1] "130317_mr_proc.txt, 130317_cal_periods.txt, 130317_cal_param.txt,1415jogs"
[1] "130318_mr_proc.txt, 130318_cal_periods.txt, 130318_cal_param.txt,313jogs"
[1] "130320_mr_proc.txt, 130320_cal_periods.txt, 130320_cal_param.txt,290jogs"
[1] "130321_mr_proc.txt, 130321_cal_periods.txt, 130321_cal_param.txt,1235jogs"
[1] "130322_mr_proc.txt, 130322_cal_periods.txt, 130322_cal_param.txt,192jogs"
[1] "130323_mr_proc.txt, 130323_cal_periods.txt, 130323_cal_param.txt,595jogs"
[1] "130324_mr_proc.txt, 130324_cal_periods.txt, 130324_cal_param.txt,1322jogs"
[1] "130325_mr_proc.txt, 130325_cal_periods.txt, 130325_cal_param.txt,1161jogs"
[1] "130326_mr_proc.txt, 130326_cal_periods.txt, 130326_cal_param.txt,1084jogs"
[1] "130327_mr_proc.txt, 130327_cal_periods.txt, 130327_cal_param.txt,1064jogs"
[1] "130328_mr_proc.txt, 130328_cal_periods.txt, 130328_cal_param.txt,1329jogs"
[1] "130329_mr_proc.txt, 130329_cal_periods.txt, 130329_cal_param.txt,633jogs"
[1] "130330_mr_proc.txt, 130330_cal_periods.txt, 130330_cal_param.txt,246jogs"
[1] "130331_mr_proc.txt, 130331_cal_periods.txt, 130331_cal_param.txt,1260jogs"
[1] "130401_mr_proc.txt, 130401_cal_periods.txt, 130401_cal_param.txt,1132jogs"
[1] "130402_mr_proc.txt, 130402_cal_periods.txt, 130402_cal_param.txt,329jogs"
[1] "Output file empty for 130403"
[1] "130404_mr_proc.txt, 130404_cal_periods.txt, 130404_cal_param.txt,1273jogs"
[1] "130405_mr_proc.txt, 130405_cal_periods.txt, 130405_cal_param.txt,768jogs"
[1] "130406_mr_proc.txt, 130406_cal_periods.txt, 130406_cal_param.txt,765jogs"
[1] "130407_mr_proc.txt, 130407_cal_periods.txt, 130407_cal_param.txt,39jogs"
[1] "130311" "130407" "d070"   "d097"  
[1] "Calculating derived concentration values"
[1] "2017-04-05 23:52:10 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.773"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-05 23:52:29 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-05 23:53:00 MDT"
[1] "2017-04-05 23:53:08 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -453.9"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.78 O2 = -549.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -632.8"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.89 O2 = -579"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1303 Valve transient for  Line 2 after Line 1 = -0.23 , -0.29 , -0.48 , -0.6 , -0.59 n = 1"
[1] "1303 Valve transient for  Line 2 after Cal = 0.29 , 0.24 , 0.09 , 0.09 , 0.09 n = 86"
[1] "1303 Valve transient for  Line 2 after HS = -2.34 , -1.18 , -0.02 , -0.01 , -0.02 n = 25"
[1] "1303 Valve transient for  Line 2 after MS = 0.53 , 0.24 , 0.03 , 0.09 , 0.09 n = 41"
[1] "1303 Valve transient for  Line 2 after LS = 1.59 , 1.43 , 1.17 , 1.01 , 0.7 n = 1"
[1] "1303 Valve transient for  Line 2 after LT = -0.19 , 0.7 , 3.87 , 4.71 , 4.39 n = 19"
[1] "1303 Valve transient for  HS after Line 1 = 0 , 0 , 0 , NA , NA n = 1"
[1] "1303 Valve transient for  HS after Line 2 = 1.15 , 0.58 , 0.01 , 0.01 , 0.01 n = 19"
[1] "1303 Valve transient for  HS after LS = 5.32 , 2.69 , 0.01 , 0 , -0.01 n = 18"
[1] "1303 Valve transient for  MS after HS = 1.77 , 0.89 , 0.01 , 0.01 , 0.01 n = 1"
[1] "1303 Valve transient for  MS after LS = 1.75 , 0.88 , -0.01 , -0.01 , 0 n = 18"
[1] "1303 Valve transient for  MS after LT = 0.82 , 0.4 , -0.01 , 0 , 0 n = 4"
[1] "1303 Valve transient for  LS after Line 2 = -1.8 , -0.89 , 0 , 0 , 0 n = 16"
[1] "1303 Valve transient for  LS after HS = -5.16 , -2.59 , -0.03 , -0.01 , -0.01 n = 21"
[1] "1303 Valve transient for  LT after Line 1 = -0.45 , -0.37 , -0.2 , -0.05 , 0 n = 2"
[1] "1303 Valve transient for  LT after HS = -2.01 , -1.24 , -0.44 , -0.36 , -0.27 n = 5"
[1] "1303 Valve transient for  LT after LS = 0.9 , 0.22 , -0.41 , -0.33 , -0.25 n = 5"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "596 out of 5777 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "5181 out of 19792 1-min values rejected as stack air"
[1] "0 out of 0 Line 1 1-min values rejected as stack air"
[1] "5181 out of 19792 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1303loxy.d069"
[1] "LMG1303loxy.d070"
[1] "LMG1303loxy.d071"
[1] "LMG1303loxy.d072"
[1] "LMG1303loxy.d073"
[1] "LMG1303loxy.d074"
[1] "LMG1303loxy.d080"
[1] "LMG1303loxy.d081"
[1] "LMG1303loxy.d082"
[1] "LMG1303loxy.d085"
[1] "LMG1303loxy.d086"
[1] "LMG1303loxy.d087"
[1] "LMG1303loxy.d088"
[1] "LMG1303loxy.d093"
[1] "LMG1303loxy.d094"
[1] "LMG1303loxy.d095"
[1] "LMG1303loxy.d096"
[1] "LMG1303loxy.d097"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.9635974
 [2,]  97.5 0.5353319
 [3,] 102.5 0.4282655
 [4,] 107.5 0.7494647
 [5,] 112.5 0.7494647
 [6,] 117.5 1.1777302
 [7,] 122.5 1.7130621
 [8,] 127.5 1.2847966
 [9,] 132.5 0.4282655
[10,] 137.5 1.7130621
[11,] 142.5 1.3918630
[12,] 147.5 1.1777302
[13,] 152.5 0.6423983
[14,] 157.5 0.9635974
[15,] 162.5 0.7494647
[16,] 167.5 0.9635974
[17,] 172.5 0.6423983
[18,] 177.5 0.6423983
[19,] 182.5 0.7494647
[20,] 187.5 1.2847966
[21,] 192.5 0.5353319
[22,] 197.5 0.9635974
[23,] 202.5 0.9635974
[24,] 207.5 1.4989293
[25,] 212.5 1.4989293
[26,] 217.5 1.4989293
[27,] 222.5 0.5353319
[28,] 227.5 0.8565310
[29,] 232.5 0.9635974
[30,] 237.5 0.9635974
[31,] 242.5 0.7494647
[32,] 247.5 0.5353319
[33,] 252.5 0.3211991
[34,] 257.5 0.3211991
[35,] 262.5 0.5353319
[36,] 267.5 0.4282655
[37,] 272.5 1.1777302
[38,] 277.5 0.1070664
[39,] 282.5 0.6423983
[40,] 287.5 0.8565310
[41,] 292.5 1.0706638
[42,] 297.5 0.9635974
[43,] 302.5 1.2847966
[44,] 307.5 0.8565310
[45,] 312.5 0.8565310
[46,] 317.5 1.2847966
[47,] 322.5 1.9271949
[48,] 327.5 1.6059957
[49,] 332.5 1.3918630
[50,] 337.5 1.1777302
[51,] 342.5 0.5353319
[52,] 347.5 0.4282655
[53,] 352.5 0.4282655
[54,] 357.5 0.7494647
[55,] 362.5 0.4282655
[56,] 367.5 0.2141328
[57,] 372.5 0.8565310
[58,] 377.5 0.7494647
[59,] 382.5 0.9635974
[60,] 387.5 0.2141328
[61,] 392.5 0.6423983
[62,] 397.5 0.9635974
[63,] 402.5 0.6423983
[64,] 412.5 0.3211991
[65,] 417.5 0.1070664
[66,] 422.5 0.3211991
[67,] 427.5 0.3211991
[68,] 432.5 0.3211991
[69,] 437.5 0.2141328
[70,] 442.5 0.1070664
[71,] 447.5 0.3211991
       [,1]      [,2]
 [1,] 107.5 0.1070664
 [2,] 112.5 0.2141328
 [3,] 117.5 0.2141328
 [4,] 127.5 0.1070664
 [5,] 132.5 0.1070664
 [6,] 147.5 0.1070664
 [7,] 162.5 0.1070664
 [8,] 192.5 0.1070664
 [9,] 202.5 0.2141328
[10,] 212.5 0.2141328
[11,] 217.5 1.8201285
[12,] 222.5 0.8565310
[13,] 227.5 0.5353319
[14,] 232.5 0.4282655
[15,] 237.5 0.1070664
[16,] 277.5 0.1070664
[17,] 282.5 0.1070664
[18,] 287.5 0.3211991
[19,] 292.5 0.2141328
[20,] 297.5 0.2141328
[21,] 302.5 0.1070664
[22,] 312.5 0.1070664
[23,] 317.5 0.1070664
[24,] 322.5 0.2141328
[25,] 327.5 0.4282655
[26,] 332.5 1.1777302
[27,] 337.5 1.9271949
[28,] 342.5 1.1777302
[29,] 347.5 1.7130621
[30,] 352.5 1.3918630
[31,] 357.5 0.3211991
[32,] 362.5 0.4282655
[33,] 367.5 0.3211991
[34,] 397.5 0.2141328
[35,] 402.5 0.1070664
[36,] 417.5 0.1070664
[37,] 432.5 0.1070664
       [,1]      [,2]
 [1,] 217.5 0.1070664
 [2,] 247.5 0.5353319
 [3,] 252.5 0.1070664
 [4,] 257.5 0.2141328
 [5,] 262.5 0.3211991
 [6,] 297.5 0.1070664
 [7,] 312.5 0.2141328
 [8,] 317.5 0.9635974
 [9,] 322.5 0.1070664
[10,] 327.5 0.8565310
[11,] 332.5 1.0706638
[12,] 337.5 1.0706638
[13,] 342.5 0.7494647
[14,] 347.5 1.0706638
[15,] 352.5 0.3211991
[16,] 357.5 0.1070664
[17,] 362.5 1.7130621
[18,] 367.5 3.4261242
[19,] 372.5 1.8201285
[20,] 377.5 0.1070664
[21,] 392.5 0.1070664
[22,] 402.5 0.1070664
[23,] 437.5 0.1070664
       [,1]      [,2]
 [1,] 317.5 0.5353319
 [2,] 322.5 0.6423983
 [3,] 327.5 1.7130621
 [4,] 332.5 0.4282655
 [5,] 337.5 0.8565310
 [6,] 342.5 0.5353319
 [7,] 352.5 0.3211991
 [8,] 357.5 0.1070664
 [9,] 362.5 0.6423983
[10,] 367.5 2.0342612
[11,] 372.5 1.9271949
[12,] 377.5 1.0706638
[13,] 382.5 0.3211991
[14,] 387.5 0.2141328
[15,] 392.5 0.0000000
[1] "making cruise html"
[1] "2017-04-05 23:53:54 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"