[1] "2025-04-29 18:25:31 MDT"
[1] "1303"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1303/130311.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1303/130312.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1303/130313.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1303/130314.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1303/130315.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1303/130316.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1303/130317.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1303/130318.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1303/130320.html"  
[10] "/net/www/docs/homes/stephens/GO2/1303/130321.html"  
[11] "/net/www/docs/homes/stephens/GO2/1303/130322.html"  
[12] "/net/www/docs/homes/stephens/GO2/1303/130323.html"  
[13] "/net/www/docs/homes/stephens/GO2/1303/130324.html"  
[14] "/net/www/docs/homes/stephens/GO2/1303/130325.html"  
[15] "/net/www/docs/homes/stephens/GO2/1303/130326.html"  
[16] "/net/www/docs/homes/stephens/GO2/1303/130327.html"  
[17] "/net/www/docs/homes/stephens/GO2/1303/130328.html"  
[18] "/net/www/docs/homes/stephens/GO2/1303/130329.html"  
[19] "/net/www/docs/homes/stephens/GO2/1303/130330.html"  
[20] "/net/www/docs/homes/stephens/GO2/1303/130331.html"  
[21] "/net/www/docs/homes/stephens/GO2/1303/130401.html"  
[22] "/net/www/docs/homes/stephens/GO2/1303/130402.html"  
[23] "/net/www/docs/homes/stephens/GO2/1303/130403.html"  
[24] "/net/www/docs/homes/stephens/GO2/1303/130404.html"  
[25] "/net/www/docs/homes/stephens/GO2/1303/130405.html"  
[26] "/net/www/docs/homes/stephens/GO2/1303/130406.html"  
[27] "/net/www/docs/homes/stephens/GO2/1303/130407.html"  
[28] "/net/www/docs/homes/stephens/GO2/1303/lmg_1303.html"
 [1] "/net/www/docs/homes/stephens/GO2/1303/130311.html"
 [2] "/net/www/docs/homes/stephens/GO2/1303/130312.html"
 [3] "/net/www/docs/homes/stephens/GO2/1303/130313.html"
 [4] "/net/www/docs/homes/stephens/GO2/1303/130314.html"
 [5] "/net/www/docs/homes/stephens/GO2/1303/130315.html"
 [6] "/net/www/docs/homes/stephens/GO2/1303/130316.html"
 [7] "/net/www/docs/homes/stephens/GO2/1303/130317.html"
 [8] "/net/www/docs/homes/stephens/GO2/1303/130318.html"
 [9] "/net/www/docs/homes/stephens/GO2/1303/130320.html"
[10] "/net/www/docs/homes/stephens/GO2/1303/130321.html"
[11] "/net/www/docs/homes/stephens/GO2/1303/130322.html"
[12] "/net/www/docs/homes/stephens/GO2/1303/130323.html"
[13] "/net/www/docs/homes/stephens/GO2/1303/130324.html"
[14] "/net/www/docs/homes/stephens/GO2/1303/130325.html"
[15] "/net/www/docs/homes/stephens/GO2/1303/130326.html"
[16] "/net/www/docs/homes/stephens/GO2/1303/130327.html"
[17] "/net/www/docs/homes/stephens/GO2/1303/130328.html"
[18] "/net/www/docs/homes/stephens/GO2/1303/130329.html"
[19] "/net/www/docs/homes/stephens/GO2/1303/130330.html"
[20] "/net/www/docs/homes/stephens/GO2/1303/130331.html"
[21] "/net/www/docs/homes/stephens/GO2/1303/130401.html"
[22] "/net/www/docs/homes/stephens/GO2/1303/130402.html"
[23] "/net/www/docs/homes/stephens/GO2/1303/130403.html"
[24] "/net/www/docs/homes/stephens/GO2/1303/130404.html"
[25] "/net/www/docs/homes/stephens/GO2/1303/130405.html"
[26] "/net/www/docs/homes/stephens/GO2/1303/130406.html"
[27] "/net/www/docs/homes/stephens/GO2/1303/130407.html"
[1] "130311" "130407"
 [1] "130311" "130312" "130313" "130314" "130315" "130316" "130317" "130318"
 [9] "130320" "130321" "130322" "130323" "130324" "130325" "130326" "130327"
[17] "130328" "130329" "130330" "130331" "130401" "130402" "130403" "130404"
[25] "130405" "130406" "130407"
[1] "000000" "999999"
[1] "Output file empty for 130311"
[1] "130312_mr_proc.txt, 130312_cal_periods.txt, 130312_cal_param.txt, 1299 jogs"
[1] "130313_mr_proc.txt, 130313_cal_periods.txt, 130313_cal_param.txt, 1184 jogs"
[1] "130314_mr_proc.txt, 130314_cal_periods.txt, 130314_cal_param.txt, 1219 jogs"
[1] "130315_mr_proc.txt, 130315_cal_periods.txt, 130315_cal_param.txt, 1311 jogs"
[1] "130316_mr_proc.txt, 130316_cal_periods.txt, 130316_cal_param.txt, 1383 jogs"
[1] "130317_mr_proc.txt, 130317_cal_periods.txt, 130317_cal_param.txt, 1415 jogs"
[1] "130318_mr_proc.txt, 130318_cal_periods.txt, 130318_cal_param.txt, 313 jogs"
[1] "130320_mr_proc.txt, 130320_cal_periods.txt, 130320_cal_param.txt, 290 jogs"
[1] "130321_mr_proc.txt, 130321_cal_periods.txt, 130321_cal_param.txt, 1235 jogs"
[1] "130322_mr_proc.txt, 130322_cal_periods.txt, 130322_cal_param.txt, 192 jogs"
[1] "130323_mr_proc.txt, 130323_cal_periods.txt, 130323_cal_param.txt, 595 jogs"
[1] "130324_mr_proc.txt, 130324_cal_periods.txt, 130324_cal_param.txt, 1322 jogs"
[1] "130325_mr_proc.txt, 130325_cal_periods.txt, 130325_cal_param.txt, 1161 jogs"
[1] "130326_mr_proc.txt, 130326_cal_periods.txt, 130326_cal_param.txt, 1084 jogs"
[1] "130327_mr_proc.txt, 130327_cal_periods.txt, 130327_cal_param.txt, 1064 jogs"
[1] "130328_mr_proc.txt, 130328_cal_periods.txt, 130328_cal_param.txt, 1329 jogs"
[1] "130329_mr_proc.txt, 130329_cal_periods.txt, 130329_cal_param.txt, 633 jogs"
[1] "130330_mr_proc.txt, 130330_cal_periods.txt, 130330_cal_param.txt, 246 jogs"
[1] "130331_mr_proc.txt, 130331_cal_periods.txt, 130331_cal_param.txt, 1260 jogs"
[1] "130401_mr_proc.txt, 130401_cal_periods.txt, 130401_cal_param.txt, 1132 jogs"
[1] "130402_mr_proc.txt, 130402_cal_periods.txt, 130402_cal_param.txt, 329 jogs"
[1] "Output file empty for 130403"
[1] "130404_mr_proc.txt, 130404_cal_periods.txt, 130404_cal_param.txt, 1273 jogs"
[1] "130405_mr_proc.txt, 130405_cal_periods.txt, 130405_cal_param.txt, 768 jogs"
[1] "130406_mr_proc.txt, 130406_cal_periods.txt, 130406_cal_param.txt, 765 jogs"
[1] "130407_mr_proc.txt, 130407_cal_periods.txt, 130407_cal_param.txt, 39 jogs"
[1] "130311" "130407" "d070"   "d097"  
[1] "Calculating derived concentration values"
[1] "2025-04-29 18:25:57 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.773"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2025-04-29 18:26:06 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-29 18:26:25 MDT"
[1] "2025-04-29 18:26:29 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.4"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.5"
[1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1303 Valve transient for  Line 2 after Line 1 = -0.23 , -0.3 , -0.48 , -0.6 , -0.6 n = 1"
[1] "1303 Valve transient for  Line 2 after Cal = 0.29 , 0.24 , 0.09 , 0.09 , 0.09 n = 86"
[1] "1303 Valve transient for  Line 2 after HS = -2.34 , -1.19 , -0.02 , -0.01 , -0.02 n = 25"
[1] "1303 Valve transient for  Line 2 after MS = 0.53 , 0.24 , 0.03 , 0.09 , 0.09 n = 41"
[1] "1303 Valve transient for  Line 2 after LS = 1.59 , 1.43 , 1.18 , 1.01 , 0.7 n = 1"
[1] "1303 Valve transient for  Line 2 after LT = -0.19 , 0.7 , 3.87 , 4.72 , 4.39 n = 19"
[1] "1303 Valve transient for  HS after Line 1 = 0 , 0 , 0 , NA , NA n = 1"
[1] "1303 Valve transient for  HS after Line 2 = 1.15 , 0.58 , 0.01 , 0.01 , 0.01 n = 19"
[1] "1303 Valve transient for  HS after LS = 5.33 , 2.69 , 0.01 , 0 , -0.01 n = 18"
[1] "1303 Valve transient for  MS after HS = 1.78 , 0.89 , 0.01 , 0.01 , 0.01 n = 1"
[1] "1303 Valve transient for  MS after LS = 1.75 , 0.88 , -0.01 , -0.01 , 0 n = 18"
[1] "1303 Valve transient for  MS after LT = 0.82 , 0.4 , -0.01 , 0 , 0 n = 4"
[1] "1303 Valve transient for  LS after Line 2 = -1.8 , -0.89 , 0 , 0 , 0 n = 16"
[1] "1303 Valve transient for  LS after HS = -5.16 , -2.59 , -0.03 , -0.01 , -0.01 n = 21"
[1] "1303 Valve transient for  LT after Line 1 = -0.45 , -0.37 , -0.2 , -0.05 , 0 n = 2"
[1] "1303 Valve transient for  LT after HS = -2.01 , -1.24 , -0.44 , -0.36 , -0.27 n = 5"
[1] "1303 Valve transient for  LT after LS = 0.9 , 0.22 , -0.41 , -0.33 , -0.25 n = 5"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "595 out of 5782 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "5187 out of 19792 1-min values rejected as stack air"
[1] "0 out of 0 Line 1 1-min values rejected as stack air"
[1] "5187 out of 19792 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1303loxy.d069"
[1] "LMG1303loxy.d070"
[1] "LMG1303loxy.d071"
[1] "LMG1303loxy.d072"
[1] "LMG1303loxy.d073"
[1] "LMG1303loxy.d074"
[1] "LMG1303loxy.d080"
[1] "LMG1303loxy.d081"
[1] "LMG1303loxy.d082"
[1] "LMG1303loxy.d085"
[1] "LMG1303loxy.d086"
[1] "LMG1303loxy.d087"
[1] "LMG1303loxy.d088"
[1] "LMG1303loxy.d093"
[1] "LMG1303loxy.d094"
[1] "LMG1303loxy.d095"
[1] "LMG1303loxy.d096"
[1] "LMG1303loxy.d097"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.9646302
 [2,]  97.5 0.5359057
 [3,] 102.5 0.4287245
 [4,] 107.5 0.7502680
 [5,] 112.5 0.7502680
 [6,] 117.5 1.1789925
 [7,] 122.5 1.7148982
 [8,] 127.5 1.1789925
 [9,] 132.5 0.4287245
[10,] 137.5 1.7148982
[11,] 142.5 1.3933548
[12,] 147.5 1.1789925
[13,] 152.5 0.6430868
[14,] 157.5 0.9646302
[15,] 162.5 0.7502680
[16,] 167.5 0.9646302
[17,] 172.5 0.6430868
[18,] 177.5 0.6430868
[19,] 182.5 0.7502680
[20,] 187.5 1.2861736
[21,] 192.5 0.5359057
[22,] 197.5 0.9646302
[23,] 202.5 0.9646302
[24,] 207.5 1.5005359
[25,] 212.5 1.5005359
[26,] 217.5 1.5005359
[27,] 222.5 0.5359057
[28,] 227.5 0.8574491
[29,] 232.5 0.9646302
[30,] 237.5 0.9646302
[31,] 242.5 0.7502680
[32,] 247.5 0.5359057
[33,] 252.5 0.3215434
[34,] 257.5 0.3215434
[35,] 262.5 0.5359057
[36,] 267.5 0.4287245
[37,] 272.5 1.1789925
[38,] 277.5 0.1071811
[39,] 282.5 0.6430868
[40,] 287.5 0.8574491
[41,] 292.5 1.0718114
[42,] 297.5 0.9646302
[43,] 302.5 1.2861736
[44,] 307.5 0.8574491
[45,] 312.5 0.8574491
[46,] 317.5 1.2861736
[47,] 322.5 1.9292605
[48,] 327.5 1.6077170
[49,] 332.5 1.3933548
[50,] 337.5 1.1789925
[51,] 342.5 0.5359057
[52,] 347.5 0.4287245
[53,] 352.5 0.4287245
[54,] 357.5 0.7502680
[55,] 362.5 0.4287245
[56,] 367.5 0.2143623
[57,] 372.5 0.8574491
[58,] 377.5 0.7502680
[59,] 382.5 0.9646302
[60,] 387.5 0.2143623
[61,] 392.5 0.6430868
[62,] 397.5 0.9646302
[63,] 402.5 0.6430868
[64,] 412.5 0.3215434
[65,] 417.5 0.1071811
[66,] 422.5 0.3215434
[67,] 427.5 0.3215434
[68,] 432.5 0.3215434
[69,] 437.5 0.2143623
[70,] 442.5 0.1071811
[71,] 447.5 0.3215434
       [,1]      [,2]
 [1,] 107.5 0.1071811
 [2,] 112.5 0.2143623
 [3,] 117.5 0.2143623
 [4,] 127.5 0.1071811
 [5,] 132.5 0.1071811
 [6,] 147.5 0.1071811
 [7,] 162.5 0.1071811
 [8,] 192.5 0.1071811
 [9,] 202.5 0.2143623
[10,] 212.5 0.2143623
[11,] 217.5 1.8220793
[12,] 222.5 0.8574491
[13,] 227.5 0.5359057
[14,] 232.5 0.4287245
[15,] 237.5 0.1071811
[16,] 277.5 0.1071811
[17,] 282.5 0.1071811
[18,] 287.5 0.3215434
[19,] 292.5 0.2143623
[20,] 297.5 0.2143623
[21,] 302.5 0.1071811
[22,] 312.5 0.1071811
[23,] 317.5 0.1071811
[24,] 322.5 0.2143623
[25,] 327.5 0.4287245
[26,] 332.5 1.1789925
[27,] 337.5 1.8220793
[28,] 342.5 1.2861736
[29,] 347.5 1.7148982
[30,] 352.5 1.3933548
[31,] 357.5 0.3215434
[32,] 362.5 0.4287245
[33,] 367.5 0.3215434
[34,] 397.5 0.2143623
[35,] 402.5 0.1071811
[36,] 417.5 0.1071811
[37,] 432.5 0.1071811
       [,1]      [,2]
 [1,] 217.5 0.1071811
 [2,] 247.5 0.5359057
 [3,] 252.5 0.1071811
 [4,] 257.5 0.2143623
 [5,] 262.5 0.3215434
 [6,] 297.5 0.1071811
 [7,] 312.5 0.2143623
 [8,] 317.5 0.9646302
 [9,] 322.5 0.1071811
[10,] 327.5 0.8574491
[11,] 332.5 1.0718114
[12,] 337.5 1.0718114
[13,] 342.5 0.7502680
[14,] 347.5 1.0718114
[15,] 352.5 0.3215434
[16,] 357.5 0.1071811
[17,] 362.5 1.7148982
[18,] 367.5 3.4297964
[19,] 372.5 1.8220793
[20,] 377.5 0.1071811
[21,] 392.5 0.1071811
[22,] 402.5 0.1071811
[23,] 437.5 0.1071811
       [,1]      [,2]
 [1,] 317.5 0.5359057
 [2,] 322.5 0.6430868
 [3,] 327.5 1.7148982
 [4,] 332.5 0.4287245
 [5,] 337.5 0.8574491
 [6,] 342.5 0.5359057
 [7,] 352.5 0.3215434
 [8,] 357.5 0.1071811
 [9,] 362.5 0.6430868
[10,] 367.5 2.0364416
[11,] 372.5 1.9292605
[12,] 377.5 1.0718114
[13,] 382.5 0.3215434
[14,] 387.5 0.2143623
[15,] 392.5 0.0000000
[1] "making cruise html"
[1] "2025-04-29 18:27:08 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"