[1] "2025-04-29 18:11:53 MDT" [1] "1302" "130303" "d062" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130303a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 49346 63 [1] 49346 [1] 49346 [1] "testing skipping spike filter" [1] 49346 [1] 49346 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:11:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.753, ave o2scale2 = 0.758" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "35 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.753, ave o2scale2 = 0.758" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "35 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:11:56 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:11:56 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:12:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:12:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 36 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 712 row(s) with low FLSP" [1] "TEMP: 74 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:12:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.379 co2off = 379.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 49.96 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 299.6 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 9 0.00780191 0.01336739 0.01127934 2 67.91371 46.53044 2 2 10 27 0.01406481 0.22212037 0.13105194 2 -13.99925 205.00422 3 4 28 37 0.22281589 0.22907873 0.22664406 2 67.88810 43.75740 4 3 38 46 0.22977422 0.23534146 0.23464601 2 39.71987 109.66756 5 4 47 55 0.42531357 0.43088079 0.42879444 2 67.92452 46.23063 6 2 56 65 0.43157639 0.43784028 0.43540526 2 -14.08241 204.83427 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.327353 1.318158 0.001831102 -0.091187304 0.005589904 3.1375730 2 1.328192 1.319060 0.000127200 0.008370345 0.036120545 4.5172876 3 1.328566 1.319492 0.011930092 -0.197642013 0.030529716 2.9781060 4 1.328911 1.319807 0.005329388 0.450494629 0.013415264 0.8609075 5 1.330182 1.321139 0.000305442 -0.312860134 0.007963844 2.1506314 6 1.330301 1.321262 -0.008401028 1.663558712 0.023034693 4.7697767 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.87 co2l1 = 0.375 co2l0 = 0" [1] "co2l0 = -122.79 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "NO SAMPLE PERIODS" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"