[1] "2025-04-29 18:10:35 MDT" [1] "1302" "130301" "d060" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130301a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:10:39 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.762" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "72 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.762" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "72 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:10:40 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:10:40 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:11:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:11:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 72 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1242 row(s) with low FLSP" [1] "TEMP: 121 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:11:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.384 co2off = 374.9 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.03 minutes" [1] "Average Cal: 56.7 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 299.64 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 9 0.00417500 0.009738513 0.007652021 2 67.45160 44.36958 2 2 10 24 0.01043409 0.218504803 0.153788880 2 -12.83693 203.51699 3 4 25 31 0.21920049 0.225463600 0.223655509 2 67.55156 45.88540 5 3 40 47 0.23382407 0.238696267 0.238348582 2 39.94275 119.83766 6 4 48 56 0.42190625 0.427473814 0.425384735 2 67.75890 46.87969 7 2 57 74 0.42816924 0.636250347 0.545171743 2 -13.18465 205.33776 8 4 75 84 0.63694575 0.643208362 0.640774045 2 67.83518 45.02708 9 3 85 93 0.64390402 0.649470023 0.648774508 2 39.94928 118.60259 10 4 94 102 0.83907413 0.844653328 0.842562492 2 67.75510 45.15967 11 2 103 112 0.84534850 0.851618547 0.849180400 2 -13.71157 207.44321 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.316883 1.306821 -0.0043687595 -1.222359304 0.010800201 2.9764866 2 1.319419 1.309448 -0.0010846989 0.004136420 0.160386947 2.7165515 3 1.320550 1.310618 0.0003990244 -0.372005147 0.005167838 1.5027733 5 1.320335 1.310401 -0.0021843154 -0.236956036 0.004702227 0.1677766 6 1.323077 1.313074 0.0053668116 -1.434964280 0.013569164 3.5165898 7 1.324866 1.314764 -0.0011537319 -0.007577088 0.174896346 2.7653269 8 1.326196 1.316039 0.0036673620 -1.055994719 0.017539637 3.0571330 9 1.326234 1.316017 0.0054919611 3.650773960 0.014102806 4.1046561 10 1.326214 1.316293 0.0064772069 -1.011122411 0.014655366 3.6020989 11 1.326248 1.316366 -0.0267703172 2.254541110 0.068327316 6.0884244 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.651 co2l1 = 0.379 co2l0 = 0" [1] "co2l0 = -122.39 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "NO SAMPLE PERIODS" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"