[1] "2025-04-29 18:08:36 MDT" [1] "1302" "130226" "d057" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130226a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85228 63 [1] 85228 [1] 85228 [1] "testing skipping spike filter" [1] 85228 [1] 85228 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:08:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.772" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "133 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.772" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "132 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:08:40 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:08:40 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:08:58 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:09:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 132 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1065 row(s) with low FLSP" [1] "TEMP: 220 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:09:10 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.392 co2off = 374.43 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 27.21 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 279.71 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.08647714 0.09204282 0.08995483 2 -12.53673 200.61063 2 4 10 19 0.09273843 0.09899751 0.09656327 2 67.19039 45.41523 6 4 95 104 0.29471183 0.30098380 0.29854508 2 67.15966 44.72583 7 2 105 114 0.30167943 0.30794210 0.30550646 2 -12.19357 205.45018 9 2 152 159 0.50414818 0.50971560 0.50786116 2 -12.16398 202.90613 10 4 160 168 0.51041097 0.51667367 0.51409010 2 67.04158 46.36654 12 2 183 189 0.71439132 0.71926042 0.71745222 2 -11.69676 199.73109 13 4 190 196 0.72134685 0.72551976 0.72412885 2 66.83921 48.65378 15 4 204 211 0.91695582 0.92252315 0.92043492 2 66.87251 43.56098 16 2 212 220 0.92321875 0.92878591 0.92669828 2 -11.28006 202.01231 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.310273 1.299415 -0.0150331294 1.21153073 0.032973824 3.277240 2 1.310092 1.299192 0.0144466373 -1.15508307 0.038586923 3.460343 6 1.312184 1.301403 -0.0067539548 0.11770320 0.021624097 3.009969 7 1.312347 1.301545 -0.0086915801 0.18992341 0.025486723 5.041159 9 1.306906 1.295906 0.0031843322 0.80666377 0.007161925 2.169539 10 1.306751 1.295671 0.0039842941 0.11115336 0.015056184 2.389483 12 1.303170 1.292443 -0.0073669640 0.69746528 0.016799268 4.029789 13 1.302532 1.291850 0.0179232634 -0.02051560 0.030275448 3.650804 15 1.301082 1.290233 -0.0002660666 0.44464465 0.008824087 2.233120 16 1.301041 1.290123 0.0076536808 -0.04865709 0.019994596 1.816225 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.012 co2l1 = 0.393 co2l0 = 0" [1] "co2l0 = -122.85 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "20 out of 22 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 82 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "2 out of 82 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"