[1] "2025-04-29 18:07:58 MDT" [1] "1302" "130225" "d056" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130225a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:08:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.767" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "83 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.767" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "85 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:08:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:08:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:08:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:08:22 MDT" [1] "reading in recalculated plot titles" [1] "Removed 85 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1127 row(s) with low FLSP" [1] "TEMP: 222 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:08:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.8" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.387 co2off = 374.56 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 7.95 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 9 0.04342827 0.04899222 0.04690582 2 67.46706 44.20015 2 2 10 18 0.04968767 0.05525127 0.05316515 2 -13.05055 202.36449 4 2 74 82 0.25238889 0.25795674 0.25586828 3 -12.97215 208.03780 5 4 83 92 0.25865194 0.26491756 0.26247902 3 67.41863 47.26903 6 3 93 101 0.26561389 0.27118087 0.27048552 3 39.82892 120.11830 8 4 154 163 0.46045353 0.46671759 0.46428001 2 67.30650 47.31203 9 2 164 171 0.46811470 0.47368524 0.47148041 2 -12.78021 209.17285 11 2 178 186 0.66957870 0.67515509 0.67306495 3 -12.64741 205.36377 12 4 187 196 0.67585191 0.68212963 0.67968709 3 67.25409 40.94761 13 3 197 205 0.68282636 0.68839905 0.68770247 3 39.82437 115.40979 14 4 206 213 0.87805700 0.88293701 0.88119423 2 67.08588 45.09977 15 2 214 222 0.88433009 0.88990515 0.88781407 2 -12.29629 201.45645 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.320373 1.310667 9.365810e-03 -0.49579426 0.02050381 2.958886 2 1.320414 1.310776 -2.846818e-03 0.78443820 0.01652135 3.308939 4 1.317307 1.307351 3.772126e-03 0.71501617 0.01004961 4.452856 5 1.317042 1.307121 1.848854e-05 -0.68010374 0.01508138 3.372530 6 1.316698 1.306796 4.532117e-03 0.72429532 0.01115631 1.310797 8 1.314962 1.304805 9.703871e-03 0.21898881 0.02432527 1.431684 9 1.315169 1.305007 -6.035708e-03 0.91232348 0.01544880 5.325104 11 1.313656 1.303276 1.284211e-02 0.01038266 0.02808469 4.924915 12 1.313199 1.302760 6.438292e-04 -0.33089800 0.01304452 1.648542 13 1.312802 1.302298 4.785411e-04 1.90477616 0.01233437 2.017971 14 1.309855 1.299071 -3.514052e-03 0.27543214 0.00729244 3.424718 15 1.309927 1.299155 6.867550e-03 0.12553133 0.04599119 6.162866 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.28 co2l1 = 0.388 co2l0 = 0.098" [1] "co2l0 = -122.47 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "27 out of 77 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "50 out of 92 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "50 out of 92 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"