[1] "2025-04-29 18:07:17 MDT" [1] "1302" "130224" "d055" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130224a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:07:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.755, ave o2scale2 = 0.76" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "69 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.755, ave o2scale2 = 0.76" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "69 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:07:22 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:07:22 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:07:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:07:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 69 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1115 row(s) with low FLSP" [1] "TEMP: 251 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:07:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.383 co2off = 369.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 28.84 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 299.56 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 5 0.001591522 0.005069444 0.004373843 3 -13.37894 205.43991 2 4 6 15 0.005765046 0.012024306 0.009590115 3 67.74186 40.49356 3 3 16 24 0.012719936 0.018287471 0.017592130 3 39.85682 115.33832 5 4 142 150 0.208255787 0.213823495 0.211735991 2 67.76666 42.98867 6 2 151 160 0.214518837 0.220781944 0.218345935 2 -12.99344 203.33426 8 2 170 178 0.417022627 0.422590278 0.420503191 3 -13.25121 205.89949 9 4 179 188 0.423285764 0.429548611 0.427113853 3 67.67610 44.47961 10 3 189 197 0.430244039 0.435811343 0.435115770 3 39.95468 113.06610 11 4 198 206 0.625774306 0.631341753 0.629253414 2 67.62462 42.68507 12 2 207 224 0.632037095 0.840062500 0.749008465 2 -13.36054 203.69140 13 4 225 234 0.840758131 0.847020862 0.844586929 2 67.54470 44.53239 15 3 243 251 0.854678877 0.860246238 0.859549489 2 39.78385 111.15319 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.326062 1.316526 0.0110729513 5.852294975 0.011113618 5.8620488 2 1.325894 1.316455 0.0102611852 -0.563521056 0.028008962 2.7478708 3 1.326128 1.316759 0.0029947069 4.365275097 0.006681796 4.3908051 5 1.327410 1.318045 -0.0044056764 -0.578793203 0.010448837 1.6103897 6 1.327598 1.318228 -0.0033487979 1.194150101 0.016494689 3.1802788 8 1.326737 1.317388 0.0105585814 -1.709682043 0.023559204 4.1948326 9 1.326569 1.317255 0.0044951244 0.517249655 0.013589606 2.3059363 10 1.326912 1.317682 0.0090227947 0.340828531 0.019813927 0.3669802 11 1.324268 1.314801 0.0094670473 0.034890691 0.020908700 1.9014328 12 1.322953 1.313457 0.0002220683 0.007071206 0.040792442 4.0589687 13 1.321722 1.312169 0.0119255518 0.784248919 0.031886706 3.5142675 15 1.322106 1.312602 0.0078058884 0.571859514 0.017327906 0.5744352 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.561 co2l1 = 0.381 co2l0 = 0.098" [1] "co2l0 = -122.04 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "22 out of 47 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "25 out of 107 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "25 out of 107 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"