[1] "2025-04-29 18:06:54 MDT" [1] "1302" "130223" "d054" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130223a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 47827 63 [1] 47827 [1] 47827 [1] "testing skipping spike filter" [1] 47827 [1] 47827 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:06:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.755, ave o2scale2 = 0.761" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "239 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.754, ave o2scale2 = 0.76" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "135 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:06:57 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:06:57 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:07:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:07:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 135 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 603 row(s) with low FLSP" [1] "TEMP: 59 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:07:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.385 co2off = 394.66 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 6.64 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 7 0.04199190 0.04755909 0.04533204 2 67.88211 47.02796 2 2 8 17 0.04825463 0.05451765 0.05208273 2 -12.87262 203.04014 4 2 27 35 0.25075402 0.25632179 0.25423512 2 -12.85879 201.80073 5 4 36 44 0.25701698 0.26258102 0.26049466 2 67.78946 44.59252 8 2 54 59 0.46648330 0.46996412 0.46891923 1 -12.67461 209.27454 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.327760 1.317592 0.004778444 1.3899510 0.012518767 4.574318 2 1.328178 1.318034 0.007297893 -2.9644018 0.019629448 8.913755 4 1.327494 1.317377 -0.005618528 0.7934566 0.012348020 1.947232 5 1.327556 1.317483 0.009803290 0.7806377 0.023265892 2.516039 8 1.324546 1.314407 -0.007156860 3.5135647 0.009606635 4.913959 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.233 co2l1 = 0.384 co2l0 = 0" [1] "co2l0 = -123.29 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "NO SAMPLE PERIODS" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"