[1] "2025-04-29 18:05:00 MDT" [1] "1302" "130220" "d051" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130220a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:05:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "65 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.764, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "67 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:05:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:05:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:05:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:05:22 MDT" [1] "reading in recalculated plot titles" [1] "Removed 67 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 513 row(s) with low FLSP" [1] "TEMP: 856 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:05:30 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.395 co2off = 373.47 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.32 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 36 44 0.1191956 0.1247628 0.1226765 2 68.33796 44.44866 3 2 45 53 0.1254584 0.1310222 0.1289360 2 -10.02529 199.99726 5 2 172 180 0.3279470 0.3335142 0.3314280 3 -10.00676 205.10243 6 4 181 190 0.3342095 0.3404749 0.3380385 3 68.22902 45.97243 7 3 191 199 0.3411716 0.3467391 0.3460414 3 41.16540 111.05897 9 4 320 329 0.5360008 0.5422632 0.5398280 2 68.29725 43.95192 10 2 330 339 0.5429585 0.5492211 0.5467865 2 -10.38879 205.33999 11 5 340 349 0.5499167 0.5561794 0.5551361 NA 28.41863 99.49024 13 2 613 622 0.7447469 0.7510067 0.7485721 3 -11.10580 204.54586 14 4 623 631 0.7517019 0.7579692 0.7558829 3 68.33910 46.53303 15 3 632 641 0.7586646 0.7649253 0.7638809 3 41.08297 114.12367 17 4 842 850 0.9542680 0.9598356 0.9577489 2 68.15605 46.64653 18 2 851 856 0.9626212 0.9660991 0.9650556 2 -11.03981 207.26171 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.301285 1.289557 0.0108795310 1.3554735 0.024858813 3.167516 3 1.301421 1.289659 0.0040901585 1.9386743 0.009093891 5.745322 5 1.305845 1.294107 -0.0185202418 -0.4639277 0.040386857 1.874115 6 1.305588 1.293899 0.0078728206 -0.1100363 0.022136895 6.550220 7 1.305776 1.294197 0.0190009693 2.2295882 0.044853332 2.305876 9 1.309696 1.298666 -0.0032818992 -0.6327659 0.009269405 1.746879 10 1.310091 1.299029 0.0055963735 -0.1727225 0.015200701 1.696880 11 1.310083 1.299024 0.0965890183 2.0903498 0.068412581 2.717046 13 1.314216 1.303114 -0.0204672185 1.2026620 0.050660413 7.336524 14 1.314266 1.303246 0.0124540065 1.5407664 0.029761348 3.895827 15 1.314828 1.303787 0.0100564896 4.6784204 0.025097644 6.656823 17 1.317822 1.306966 -0.0002738696 0.4669186 0.015633765 3.481840 18 1.317824 1.306881 -0.0183436009 -0.9170465 0.023794531 2.758292 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.483 co2l1 = 0.394 co2l0 = 0.084" [1] "co2l0 = -122.48 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "66 out of 194 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "128 out of 689 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "128 out of 689 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"