[1] "2025-04-29 18:04:36 MDT" [1] "1302" "130216" "d047" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130216a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 42900 63 [1] 42900 [1] 42900 [1] "testing skipping spike filter" [1] 42900 [1] 42900 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:04:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.792, ave o2scale2 = 0.798" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 3 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "212 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.792, ave o2scale2 = 0.798" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 3 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "213 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:04:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:04:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:04:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:04:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 213 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 502 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:04:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.422 co2off = 361.33 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 7.69 minutes" [1] "Shortest Cal: 2.01 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 4 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 187 196 0.1317234 0.1379883 0.1355500 3 -5.82043 201.39409 1.264878 3 4 197 206 0.1386851 0.1449686 0.1425256 3 67.95785 39.97585 1.264979 4 3 207 216 0.1456632 0.1519262 0.1508804 3 42.59066 108.82276 1.265172 7 4 392 401 0.3405673 0.3468275 0.3443931 1 67.68193 41.88907 1.263099 jfcv2 co2slp o2slp co2sd o2sd 2 1.252305 -0.0126186540 -0.904105 0.031859668 4.620426 3 1.252433 0.0075200150 1.103160 0.019276447 5.911081 4 1.252632 -0.0033100360 -8.659021 0.011606023 12.802037 7 1.251979 -0.0009754721 -3.662058 0.004339581 13.424324 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 376.825 co2l1 = 0.421 co2l0 = 0.026" [1] "co2l0 = -121 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "68 out of 193 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "125 out of 418 1-min values rejected as stack air" [1] "125 out of 377 Line 1 1-min values rejected as stack air" [1] "0 out of 41 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"