[1] "2025-04-29 18:03:57 MDT" [1] "1302" "130215" "d046" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130215a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:04:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.799" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "22 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.799" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:04:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:04:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:04:16 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:04:17 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 697 row(s) with low FLSP" [1] "Removed 9 row(s) with high PFRIDGE" [1] "TEMP: 707 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:04:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.419 co2off = 370.95 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 32.16 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 299.7 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 65 73 0.08951510 0.0950798 0.09299239 2 69.508536 46.43651 3 2 74 91 0.09577778 0.3039024 0.21280333 2 -5.685555 207.40595 4 4 92 101 0.30459786 0.3108610 0.30842546 2 68.893328 42.57015 5 3 102 110 0.31155637 0.3171238 0.31642825 2 43.307286 120.80092 6 4 111 119 0.50709604 0.5126632 0.51057562 2 68.505143 40.75388 7 2 120 126 0.51475000 0.5189260 0.51753523 2 -5.739362 200.33188 9 2 301 309 0.71422682 0.7197940 0.71770675 2 -5.676125 193.36285 10 4 310 318 0.72048958 0.7260570 0.72396838 2 68.259482 50.02706 15 4 598 607 0.92298828 0.9292512 0.92681627 2 68.092828 46.52785 16 2 608 617 0.92994676 0.9362095 0.93377425 2 -5.723414 208.05226 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.269781 1.257690 0.0079357733 0.54064103 0.019559866 3.413327 3 1.267515 1.255265 0.0012000831 -0.01863737 0.181462347 7.041257 4 1.265445 1.253139 0.0014472020 -0.84445794 0.019381789 4.612435 5 1.265313 1.252839 0.0056453297 3.92179759 0.013403535 3.935303 6 1.261682 1.248826 0.0053674698 1.26136267 0.012497172 4.116005 7 1.261978 1.249133 -0.0006054533 -0.35197156 0.002841311 2.947049 9 1.262623 1.249700 0.0025550977 0.54697136 0.009124072 8.268112 10 1.262493 1.249679 0.0070053938 1.72638747 0.017126928 6.676741 15 1.263722 1.251061 -0.0008750637 1.27439070 0.008591209 5.902996 16 1.263749 1.251071 -0.0086596807 0.95088773 0.031339264 4.081216 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 376.842 co2l1 = 0.415 co2l0 = 0" [1] "co2l0 = -122.49 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "103 out of 140 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "37 out of 568 1-min values rejected as stack air" [1] "9 out of 324 Line 1 1-min values rejected as stack air" [1] "28 out of 244 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"