[1] "2025-04-29 18:03:13 MDT" [1] "1302" "130214" "d045" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130214a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:03:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "29 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "29 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:03:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:03:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:03:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:03:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 29 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 9 row(s) with high PFRIDGE" [1] "TEMP: 1397 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:03:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.404 co2off = 371.37 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 8.17 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 62 70 0.04554690 0.05111131 0.04902420 3 -4.608188 203.38964 3 4 71 80 0.05180961 0.05806849 0.05563452 3 73.876117 40.93279 4 3 81 89 0.05876398 0.06432824 0.06363283 3 46.856116 109.98061 7 4 358 366 0.25444346 0.26001059 0.25792443 2 72.581223 42.05566 8 2 367 375 0.26070602 0.26630148 0.26419710 2 -5.041598 199.06436 12 2 651 659 0.46327442 0.46884149 0.46675519 3 -5.548179 196.05739 13 4 660 668 0.46953704 0.47510428 0.47301817 3 71.413205 45.99312 14 3 669 677 0.48345032 0.48901777 0.48832245 3 44.956643 110.84867 16 4 935 943 0.67202323 0.67758681 0.67550072 2 70.626295 41.94097 17 2 944 952 0.67828241 0.68384635 0.68176004 2 -5.554027 201.15026 20 2 1228 1236 0.88074210 0.88630981 0.88422141 2 -5.617384 207.60436 21 4 1237 1246 0.88700515 0.89326823 0.89083262 2 69.937633 40.45405 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.293565 1.282061 -0.0112695911 5.64829348 0.024797513 14.476312 3 1.293168 1.281669 0.0062493212 -0.96464915 0.018219778 2.920979 4 1.293090 1.281547 -0.0048610358 -4.72846506 0.011904209 5.397679 7 1.288952 1.277773 -0.0067136832 2.82674961 0.014647723 9.855541 8 1.288704 1.277459 -0.0011371296 -1.12456352 0.009696626 11.555158 12 1.282903 1.271468 -0.0043077852 0.40189864 0.010332520 4.551582 13 1.282614 1.271096 0.0109828368 0.06725935 0.027342844 4.328111 14 1.282340 1.270712 0.0036400156 -13.28272164 0.012448943 13.310347 16 1.277806 1.266049 -0.0051762557 2.07138954 0.015083954 7.503162 17 1.277644 1.265846 -0.0086852758 -3.82428063 0.025074469 8.844027 20 1.273539 1.261675 -0.0002113693 4.10822292 0.006269182 9.218421 21 1.273354 1.261531 0.0037323149 -0.10277725 0.012819159 3.981433 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 376.469 co2l1 = 0.403 co2l0 = 0.013" [1] "co2l0 = -121.82 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "108 out of 335 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "227 out of 1226 1-min values rejected as stack air" [1] "148 out of 366 Line 1 1-min values rejected as stack air" [1] "79 out of 860 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"