[1] "2025-04-29 18:02:57 MDT" [1] "1302" "130213" "d044" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130213a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 68820 63 [1] 68820 [1] 68820 [1] "testing skipping spike filter" [1] 68820 [1] 68820 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:03:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.783" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 4 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 3 MR FC 2 jog(s) with SP SD > 1000" [1] "103 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.783" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 5 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 3 RC FC 2 jog(s) with SP SD > 1000" [1] "103 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:03:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:03:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:03:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:03:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 103 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 9 row(s) with high PFRIDGE" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1032 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:03:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.39 co2off = 370.23 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 8.16 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 223 231 0.4193778 0.4249452 0.4228581 2 76.277295 47.48551 3 2 232 240 0.4256405 0.4312083 0.4291211 2 -3.469214 203.52996 5 2 518 526 0.6280914 0.6336591 0.6315693 3 -3.033384 203.58901 6 4 527 536 0.6343543 0.6406162 0.6381798 3 76.792133 42.48177 7 3 537 545 0.6413127 0.6468762 0.6461808 3 49.438321 109.33191 9 4 810 818 0.8368137 0.8423810 0.8402943 2 75.573018 42.73442 10 2 819 827 0.8430764 0.8486436 0.8465574 2 -3.246223 201.92076 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.281619 1.274812 -0.0068875584 0.3909896 0.01694383 2.835254 3 1.281735 1.274816 0.0002603523 1.0003773 0.02008802 3.244164 5 1.285451 1.277536 -0.0054825958 -0.1656816 0.01261150 1.087053 6 1.285819 1.277864 0.0050745205 -0.4395978 0.01658502 2.788873 7 1.285984 1.277971 -0.0263414634 -2.2038359 0.06084855 2.472640 9 1.293885 1.281610 -0.0047296787 -1.7375398 0.01245841 8.170789 10 1.294105 1.281764 -0.0126073586 2.4029316 0.02753936 6.652514 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 375.602 co2l1 = 0.39 co2l0 = -0.018" [1] "co2l0 = -122.21 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "271 out of 465 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "194 out of 946 1-min values rejected as stack air" [1] "194 out of 946 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"