[1] "2025-04-29 18:12:19 MDT"
[1] "1302"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1302/130213.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1302/130214.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1302/130215.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1302/130216.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1302/130219.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1302/130220.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1302/130221.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1302/130222.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1302/130223.html"  
[10] "/net/www/docs/homes/stephens/GO2/1302/130224.html"  
[11] "/net/www/docs/homes/stephens/GO2/1302/130225.html"  
[12] "/net/www/docs/homes/stephens/GO2/1302/130226.html"  
[13] "/net/www/docs/homes/stephens/GO2/1302/130227.html"  
[14] "/net/www/docs/homes/stephens/GO2/1302/130228.html"  
[15] "/net/www/docs/homes/stephens/GO2/1302/130301.html"  
[16] "/net/www/docs/homes/stephens/GO2/1302/130302.html"  
[17] "/net/www/docs/homes/stephens/GO2/1302/130303.html"  
[18] "/net/www/docs/homes/stephens/GO2/1302/lmg_1302.html"
 [1] "/net/www/docs/homes/stephens/GO2/1302/130213.html"
 [2] "/net/www/docs/homes/stephens/GO2/1302/130214.html"
 [3] "/net/www/docs/homes/stephens/GO2/1302/130215.html"
 [4] "/net/www/docs/homes/stephens/GO2/1302/130216.html"
 [5] "/net/www/docs/homes/stephens/GO2/1302/130219.html"
 [6] "/net/www/docs/homes/stephens/GO2/1302/130220.html"
 [7] "/net/www/docs/homes/stephens/GO2/1302/130221.html"
 [8] "/net/www/docs/homes/stephens/GO2/1302/130222.html"
 [9] "/net/www/docs/homes/stephens/GO2/1302/130223.html"
[10] "/net/www/docs/homes/stephens/GO2/1302/130224.html"
[11] "/net/www/docs/homes/stephens/GO2/1302/130225.html"
[12] "/net/www/docs/homes/stephens/GO2/1302/130226.html"
[13] "/net/www/docs/homes/stephens/GO2/1302/130227.html"
[14] "/net/www/docs/homes/stephens/GO2/1302/130228.html"
[15] "/net/www/docs/homes/stephens/GO2/1302/130301.html"
[16] "/net/www/docs/homes/stephens/GO2/1302/130302.html"
[17] "/net/www/docs/homes/stephens/GO2/1302/130303.html"
[1] "130213" "130303"
 [1] "130213" "130214" "130215" "130216" "130219" "130220" "130221" "130222"
 [9] "130223" "130224" "130225" "130226" "130227" "130228" "130301" "130302"
[17] "130303"
[1] "000000" "999999"
[1] "130213_mr_proc.txt, 130213_cal_periods.txt, 130213_cal_param.txt, 1032 jogs"
[1] "130214_mr_proc.txt, 130214_cal_periods.txt, 130214_cal_param.txt, 1397 jogs"
[1] "130215_mr_proc.txt, 130215_cal_periods.txt, 130215_cal_param.txt, 707 jogs"
[1] "130216_mr_proc.txt, 130216_cal_periods.txt, 130216_cal_param.txt, 502 jogs"
[1] "130219_mr_proc.txt, 130219_cal_periods.txt, 130219_cal_param.txt, 5 jogs"
[1] "130220_mr_proc.txt, 130220_cal_periods.txt, 130220_cal_param.txt, 856 jogs"
[1] "130221_mr_proc.txt, 130221_cal_periods.txt, 130221_cal_param.txt, 108 jogs"
[1] "130222_mr_proc.txt, 130222_cal_periods.txt, 130222_cal_param.txt, 124 jogs"
[1] "130223_mr_proc.txt, 130223_cal_periods.txt, 130223_cal_param.txt, 59 jogs"
[1] "130224_mr_proc.txt, 130224_cal_periods.txt, 130224_cal_param.txt, 251 jogs"
[1] "130225_mr_proc.txt, 130225_cal_periods.txt, 130225_cal_param.txt, 222 jogs"
[1] "130226_mr_proc.txt, 130226_cal_periods.txt, 130226_cal_param.txt, 220 jogs"
[1] "130227_mr_proc.txt, 130227_cal_periods.txt, 130227_cal_param.txt, 131 jogs"
[1] "130228_mr_proc.txt, 130228_cal_periods.txt, 130228_cal_param.txt, 95 jogs"
[1] "130301_mr_proc.txt, 130301_cal_periods.txt, 130301_cal_param.txt, 121 jogs"
[1] "130302_mr_proc.txt, 130302_cal_periods.txt, 130302_cal_param.txt, 122 jogs"
[1] "130303_mr_proc.txt, 130303_cal_periods.txt, 130303_cal_param.txt, 74 jogs"
[1] "130213" "130303" "d044"   "d062"  
[1] "Calculating derived concentration values"
[1] "2025-04-29 18:12:25 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.781"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2025-04-29 18:12:27 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-29 18:12:32 MDT"
[1] "2025-04-29 18:12:33 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.6"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.6"
[1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1302 Valve transient for  Line 1 after Line 2 = 1.05 , 1.89 , 2.93 , 2.63 , 1.86 n = 1"
[1] "1302 Valve transient for  Line 1 after Cal = -0.93 , -0.4 , -0.31 , -0.28 , -0.27 n = 6"
[1] "1302 Valve transient for  Line 2 after Line 1 = 8.32 , 8.01 , 5.22 , 5.32 , 5.48 n = 6"
[1] "1302 Valve transient for  Line 2 after Cal = 0.17 , 0.61 , 4.64 , 6.48 , 5.45 n = 3"
[1] "1302 Valve transient for  Line 1 after HS = -1.52 , -0.49 , -0.27 , -0.24 , -0.21 n = 3"
[1] "1302 Valve transient for  Line 1 after MS = 0.11 , -0.14 , -0.36 , -0.33 , -0.34 n = 3"
[1] "1302 Valve transient for  Line 1 after LT = 0.5 , -0.93 , 1.26 , 11.66 , 24.8 n = 1"
[1] "1302 Valve transient for  Line 2 after HS = -0.1 , -0.08 , -0.05 , -0.04 , -0.04 n = 1"
[1] "1302 Valve transient for  Line 2 after MS = 1.63 , 3.05 , 5.55 , 7.12 , 7.54 n = 2"
[1] "1302 Valve transient for  Line 2 after LT = -1.37 , 0.61 , 4.64 , 6.48 , 5.45 n = 1"
[1] "1302 Valve transient for  HS after Line 1 = 0 , -0.01 , -0.01 , -0.01 , -0.01 n = 22"
[1] "1302 Valve transient for  HS after Line 2 = 0.01 , 0.01 , 0 , 0 , 0 n = 3"
[1] "1302 Valve transient for  HS after MS = 3.5 , 1.76 , 0.02 , 0.01 , 0.01 n = 1"
[1] "1302 Valve transient for  HS after LS = 5.36 , 2.7 , 0.01 , 0 , 0 n = 18"
[1] "1302 Valve transient for  MS after Line 1 = 1.91 , 0.95 , -0.02 , -0.02 , -0.02 n = 1"
[1] "1302 Valve transient for  MS after LS = 1.75 , 0.87 , -0.01 , -0.01 , 0 n = 18"
[1] "1302 Valve transient for  MS after LT = 0.56 , 0.28 , -0.01 , -0.01 , 0 n = 4"
[1] "1302 Valve transient for  LS after Line 1 = -0.01 , -0.01 , 0 , 0 , 0 n = 22"
[1] "1302 Valve transient for  LS after Line 2 = -1.97 , -0.99 , 0.01 , 0.01 , 0 n = 4"
[1] "1302 Valve transient for  LS after HS = -5.19 , -2.6 , -0.02 , 0 , 0 n = 24"
[1] "1302 Valve transient for  LT after HS = -2.05 , -1.58 , -0.88 , -0.69 , -0.49 n = 6"
[1] "1302 Valve transient for  LT after LS = 0.58 , -0.12 , -0.81 , -0.59 , -0.39 n = 4"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "74 out of 1553 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "1479 out of 4128 1-min values rejected as stack air"
[1] "852 out of 2013 Line 1 1-min values rejected as stack air"
[1] "627 out of 2115 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1302loxy.d044"
[1] "LMG1302loxy.d045"
[1] "LMG1302loxy.d046"
[1] "LMG1302loxy.d047"
[1] "LMG1302loxy.d052"
[1] "LMG1302loxy.d053"
[1] "LMG1302loxy.d054"
[1] "LMG1302loxy.d055"
[1] "LMG1302loxy.d056"
[1] "LMG1302loxy.d057"
[1] "LMG1302loxy.d058"
[1] "LMG1302loxy.d059"
[1] "LMG1302loxy.d060"
[1] "LMG1302loxy.d061"
[1] "LMG1302loxy.d062"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]   [,2]
 [1,] 112.5 1.5625
 [2,] 122.5 1.5625
 [3,] 132.5 1.5625
 [4,] 147.5 1.5625
 [5,] 152.5 1.5625
 [6,] 427.5 1.5625
 [7,] 432.5 1.5625
 [8,] 437.5 3.1250
 [9,] 447.5 4.6875
       [,1]    [,2]
 [1,]  92.5  4.6875
 [2,]  97.5  1.5625
 [3,] 102.5 14.0625
 [4,] 107.5 10.9375
 [5,] 112.5  9.3750
 [6,] 117.5  3.1250
 [7,] 122.5  3.1250
 [8,] 132.5  4.6875
 [9,] 137.5  1.5625
[10,] 157.5  1.5625
[11,] 167.5  1.5625
[12,] 432.5  1.5625
[13,] 437.5  4.6875
[14,] 442.5  6.2500
[15,] 447.5  4.6875
      [,1]   [,2]
[1,]  92.5 3.1250
[2,]  97.5 3.1250
[3,] 107.5 1.5625
     [,1] [,2]
[1] "making cruise html"
[1] "2025-04-29 18:12:52 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"