[1] "2025-04-29 17:58:58 MDT" [1] "1301" "130206" "d037" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130206a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 73589 63 [1] 73589 [1] 73589 [1] "testing skipping spike filter" [1] 73589 [1] 73589 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:59:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.777" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "145 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.777" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "145 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:59:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:59:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:59:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:59:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 146 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 289 row(s) with low FLSP" [1] "Removed 7 row(s) with high PFRIDGE" [1] "TEMP: 784 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:59:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.389 co2off = 364.1 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 7.48 minutes" [1] "Shortest Cal: 2.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 23 31 0.01849815 0.02406169 0.02197544 2 66.18643 -63.841603 3 2 32 40 0.02475700 0.03032445 0.02823822 2 -13.26869 96.789189 5 2 287 295 0.22735414 0.23291782 0.23083130 3 -13.33011 92.465586 6 4 296 305 0.23361328 0.23987286 0.23743880 3 66.24426 -61.422397 7 3 306 314 0.24056832 0.24613270 0.24543731 3 38.85757 -2.545260 8 4 315 323 0.43584149 0.44143287 0.43933607 2 66.38980 -61.009096 9 2 324 332 0.44213206 0.44772109 0.44562535 2 -13.61079 95.346803 11 2 542 546 0.64483163 0.64902431 0.64832547 3 -13.20854 92.496885 12 4 547 553 0.65112109 0.65741094 0.65559351 3 66.52905 -61.613416 13 3 554 562 0.65811123 0.66370726 0.66300821 3 39.13446 5.469003 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.292232 1.280285 0.0021109304 -0.78374853 0.006742321 6.1213996 3 1.292285 1.280326 -0.0150583322 -3.58665960 0.033249099 8.2854330 5 1.291221 1.279795 0.0070829658 2.25853728 0.025659522 9.8686446 6 1.290966 1.279782 0.0044017490 -0.69656686 0.013753345 5.8115139 7 1.291205 1.280240 0.0033628666 -2.88380055 0.007588834 3.0956852 8 1.296828 1.285923 -0.0035924764 -0.08005824 0.011432457 6.9075040 9 1.297069 1.286210 0.0005099437 1.02701009 0.010697964 3.9620546 11 1.305683 1.295342 -0.0004036423 0.60728183 0.001482098 0.6111027 12 1.306556 1.296256 0.0059612257 -0.61416236 0.016926368 3.4828515 13 1.307108 1.296804 -0.0005286674 2.59724638 0.006677159 2.7429481 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.549 co2l1 = 0.39 co2l0 = 0.11" [1] "co2l0 = -97.97 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "179 out of 374 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "195 out of 674 1-min values rejected as stack air" [1] "195 out of 674 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"