[1] "2025-04-29 17:57:38 MDT" [1] "1301" "130204" "d035" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130204a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:57:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.786" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.786" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:57:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:57:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:58:03 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:58:05 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1423 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:58:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.397 co2off = 379.47 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 74 83 0.05181481 0.05809375 0.05565013 3 -12.20544 94.006145 3 4 84 93 0.05878935 0.06504977 0.06261518 3 65.44205 -63.758676 4 3 94 103 0.06574537 0.07200894 0.07096571 3 38.76343 6.769749 6 4 374 383 0.26051166 0.26677523 0.26433785 2 65.60506 -62.478956 7 2 384 393 0.26747384 0.27374184 0.27130647 2 -12.54215 95.381377 8 5 394 403 0.27443733 0.28069676 0.27965337 NA 32.86481 -12.438201 10 2 669 678 0.46920370 0.47546334 0.47302897 3 -12.74923 96.736652 11 4 679 688 0.47615868 0.48241855 0.47998403 3 65.80131 -62.920900 12 3 689 698 0.48311406 0.48937731 0.48833266 3 38.79379 5.101882 14 4 963 972 0.67788542 0.68414832 0.68171355 2 65.85423 -61.458621 15 2 973 982 0.68484378 0.69110370 0.68866917 2 -12.80907 95.872555 17 2 1261 1270 0.88655530 0.89281817 0.89038399 3 -12.25521 96.201296 18 4 1271 1280 0.89351354 0.89977292 0.89733859 3 65.83725 -61.505436 19 5 1281 1290 0.90046826 0.90673003 0.90568485 NA 32.92100 -15.658092 20 3 1291 1300 0.90742656 0.91368981 0.91264452 3 38.88993 9.076810 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.279547 1.265935 0.0007616847 -0.98062754 0.007039113 2.827814 3 1.279576 1.265942 0.0027402577 -0.36383277 0.008776391 2.528632 4 1.279927 1.266313 0.0083255492 3.94128122 0.021896862 5.329040 6 1.283147 1.269632 0.0039942400 1.15170218 0.010323128 3.105446 7 1.283285 1.269771 -0.0185630487 0.24569429 0.049430021 1.292486 8 1.283157 1.269636 0.0408035937 0.69651806 0.028902990 1.211380 10 1.287327 1.274043 -0.0085136228 0.91113219 0.022469368 3.512423 11 1.287280 1.274005 -0.0020992999 -0.39127799 0.021695719 1.721146 12 1.287196 1.273915 0.0078907259 0.93465824 0.021010651 1.235489 14 1.288304 1.275009 -0.0003401739 -0.98276199 0.006438215 3.810352 15 1.288299 1.275022 -0.0104559708 1.01118464 0.028792000 5.431102 17 1.285861 1.272623 0.0140370470 -0.27117497 0.035194833 2.648198 18 1.285678 1.272364 -0.0019731106 -0.09373746 0.017304585 4.972741 19 1.285483 1.272057 0.0372995151 -0.82243459 0.026516504 3.321613 20 1.285316 1.271862 0.0013118909 1.65695953 0.012536395 2.162879 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.321 co2l1 = 0.397 co2l0 = 0.105" [1] "co2l0 = -98.22 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1216 1-min values rejected as stack air" [1] "0 out of 1216 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"