[1] "2025-04-29 17:56:55 MDT" [1] "1301" "130203" "d034" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130203a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:56:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.783, ave o2scale2 = 0.791" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "56 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.783, ave o2scale2 = 0.791" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "56 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:56:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:56:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:57:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:57:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 56 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1379 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:57:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.405 co2off = 373.59 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 11 20 0.008242998 0.01451134 0.01207086 1 64.97324 -59.678259 4 5 29 38 0.022160909 0.02842367 0.02738056 NA 32.93128 -12.532466 7 2 259 268 0.217059086 0.22331892 0.22088416 3 -12.20382 96.635150 8 4 269 278 0.224014352 0.23027775 0.22784045 3 65.13421 -58.910192 9 3 279 288 0.230973264 0.23723594 0.23619115 3 38.58432 10.755932 13 4 556 565 0.425760417 0.43201982 0.42958548 2 64.95024 -61.818021 14 2 566 575 0.432715278 0.43897769 0.43654088 2 -11.34741 98.850162 17 2 854 863 0.634434028 0.64069323 0.63825896 3 -11.58405 94.599481 18 4 864 873 0.641388889 0.64764809 0.64521387 3 65.21179 -64.992660 19 5 874 883 0.648343461 0.65460628 0.65356302 NA 32.91112 -8.464383 20 3 884 893 0.655301534 0.66156053 0.66051743 3 38.87117 4.940823 22 4 1154 1163 0.843116898 0.84937963 0.84694550 2 65.26982 -64.959747 23 2 1164 1173 0.850075174 0.85633796 0.85390324 2 -11.50096 94.076384 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.280598 1.266797 0.005875740 -0.74580477 0.016461855 7.5272648 4 1.280477 1.266690 0.035885167 -3.11534858 0.025411650 6.1425045 7 1.276686 1.263765 -0.009641994 0.25205557 0.025756510 11.2369136 8 1.276565 1.263612 0.009199133 0.16853892 0.029863827 3.2410406 9 1.276955 1.263960 0.006879177 2.85697787 0.019810358 4.7630468 13 1.277040 1.263808 -0.009218008 -0.28648700 0.022973889 4.2227407 14 1.276918 1.263708 -0.008192960 -0.78729988 0.022993083 3.9697524 17 1.275262 1.261739 0.008737846 -0.32160791 0.021867459 4.0845583 18 1.275427 1.261871 -0.001310122 -0.23429150 0.015503742 2.8658595 19 1.275780 1.262205 0.048930682 -0.36236952 0.034648232 2.1195110 20 1.276023 1.262434 -0.002322281 -0.16931793 0.009407073 0.3604838 22 1.276405 1.262771 0.002920858 0.77331710 0.010145726 2.5620799 23 1.276745 1.263132 0.025270690 -0.07595543 0.063503251 1.8235152 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.086 co2l1 = 0.404 co2l0 = 0.093" [1] "co2l0 = -98.38 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "83 out of 600 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "517 out of 1181 1-min values rejected as stack air" [1] "363 out of 942 Line 1 1-min values rejected as stack air" [1] "154 out of 239 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"