[1] "2025-04-29 17:55:29 MDT" [1] "1301" "130201" "d032" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130201a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:55:33 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.785, ave o2scale2 = 0.794" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "6 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.785, ave o2scale2 = 0.794" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "6 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:55:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:55:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:55:51 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:55:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 6 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1430 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:56:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.406 co2off = 379.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.88 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 186 195 0.1295679 0.1358274 0.1333929 3 -11.26034 95.696355 3 4 196 205 0.1365228 0.1427819 0.1403477 3 64.24689 -63.065096 4 5 206 215 0.1434774 0.1497372 0.1486938 NA 31.95903 -5.002557 5 3 216 225 0.1504325 0.1566921 0.1556489 3 38.38370 3.581723 7 4 482 491 0.3382556 0.3445150 0.3420807 2 64.12470 -64.896305 8 2 492 501 0.3452106 0.3514699 0.3490357 2 -10.42678 96.314268 10 2 782 791 0.5469500 0.5532130 0.5507777 3 -11.86413 93.091362 11 4 792 801 0.5539085 0.5601713 0.5577370 3 64.68975 -64.073928 12 3 802 811 0.5608667 0.5671262 0.5660828 3 38.42273 7.396562 14 4 1082 1091 0.7556443 0.7619051 0.7594701 2 64.88547 -62.082881 15 2 1092 1101 0.7626007 0.7688637 0.7664261 2 -12.13942 95.245825 16 5 1102 1111 0.7695590 0.7758181 0.7747748 NA 32.15419 -15.230318 18 2 1382 1391 0.9643167 0.9705764 0.9681419 3 -13.47340 95.251345 19 4 1392 1401 0.9712719 0.9775347 0.9750978 3 65.10564 -64.761422 20 3 1402 1409 0.9796211 0.9844931 0.9841455 3 38.26548 7.292212 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.267808 1.252317 -0.0044573004 0.10710441 0.013608279 1.8767728 3 1.267734 1.252258 0.0098405686 -0.36984042 0.026421712 7.3137855 4 1.267802 1.252255 0.0513604593 -2.64124753 0.036371805 4.2776202 5 1.267751 1.252219 0.0113296670 -3.76631820 0.031738546 5.2229515 7 1.270826 1.255629 -0.0056475201 -0.11595517 0.014370098 2.2706016 8 1.270905 1.255693 -0.0169350292 0.84685656 0.042706941 4.0432241 10 1.274731 1.259706 -0.0100296406 -0.96832917 0.028446504 3.7508761 11 1.274962 1.259994 0.0040142166 0.46897667 0.022414595 3.6019444 12 1.275282 1.260355 0.0075293834 3.54467270 0.022368189 5.0455700 14 1.278250 1.263508 -0.0048951832 0.70157723 0.013880790 2.3214014 15 1.278352 1.263650 -0.0071752269 -0.01901136 0.020884027 4.4365741 16 1.278141 1.263447 0.0310809686 1.81996451 0.022008699 2.9707706 18 1.281418 1.267048 0.0003767088 -0.23181916 0.007453647 2.5034350 19 1.281672 1.267322 0.0022628694 0.08949568 0.011620571 0.8284274 20 1.282141 1.267737 0.0040394722 -8.02225309 0.011246435 5.6799167 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.145 co2l1 = 0.406 co2l0 = 0.088" [1] "co2l0 = -98 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "286 out of 675 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "389 out of 1225 1-min values rejected as stack air" [1] "389 out of 1225 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"