[1] "2025-04-29 17:54:41 MDT" [1] "1301" "130131" "d031" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130131a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:54:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.789, ave o2scale2 = 0.799" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.789, ave o2scale2 = 0.799" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:54:46 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:54:46 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:55:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:55:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1425 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:55:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.407 co2off = 379.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 119 128 0.08598935 0.09225237 0.08981760 2 64.07626 -61.255856 3 2 129 138 0.09294792 0.09920804 0.09677362 2 -12.10520 94.800874 5 2 418 427 0.29474306 0.30100240 0.29856802 3 -12.30869 92.717432 6 4 428 437 0.30169792 0.30795729 0.30552341 3 64.22834 -66.569020 7 3 438 447 0.30865278 0.31491345 0.31386973 3 37.85147 4.505780 9 4 717 726 0.50345718 0.50971704 0.50728251 2 64.32966 -63.883870 10 2 727 736 0.51041227 0.51667228 0.51423762 2 -12.37112 98.521968 11 5 737 746 0.51736753 0.52363053 0.52258571 NA 31.31612 -12.171494 13 2 1015 1024 0.71212098 0.71838018 0.71594611 3 -11.70617 99.966539 14 4 1025 1034 0.71907569 0.72533469 0.72290073 3 64.10505 -62.134301 15 3 1035 1044 0.72603018 0.73228987 0.73124684 3 37.94664 -3.681025 17 4 1312 1321 0.92082176 0.92708478 0.92464924 2 64.28170 -64.812455 18 2 1322 1331 0.92778021 0.93404320 0.93160833 2 -11.92080 92.749172 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.269423 1.255004 0.0051995653 0.47144330 0.013345864 4.237448 3 1.269147 1.255011 -0.0167211298 1.04366904 0.041723777 4.278846 5 1.271409 1.255393 -0.0028068067 -1.87948861 0.008451873 4.955931 6 1.271257 1.255100 0.0047575389 -0.83297967 0.013186926 2.864601 7 1.271057 1.254797 0.0014234726 -0.78581173 0.005873575 2.890679 9 1.266732 1.250230 -0.0005034968 0.43743324 0.004126894 1.708057 10 1.266952 1.250460 0.0101121928 -0.94838050 0.025121135 4.167190 11 1.266772 1.250247 0.0541777630 2.88531838 0.038360543 4.320438 13 1.264496 1.248356 -0.0132313722 5.60421942 0.034358498 15.643510 14 1.264193 1.248046 0.0052536738 0.73497228 0.014545128 11.754998 15 1.264097 1.247976 0.0005290243 -2.27773100 0.008518019 4.766860 17 1.265210 1.249508 -0.0038154706 0.02280246 0.011498095 1.350251 18 1.265564 1.249796 0.0095525562 0.46896312 0.025503539 2.833960 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.258 co2l1 = 0.407 co2l0 = 0.111" [1] "co2l0 = -97.88 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "92 out of 183 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "91 out of 1243 1-min values rejected as stack air" [1] "91 out of 1243 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"