[1] "2025-04-29 17:54:04 MDT" [1] "1301" "130130" "d030" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130130a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:54:08 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.8" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "39 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.8" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "39 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:54:08 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:54:08 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:54:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:54:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 39 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1392 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:54:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.41 co2off = 385.06 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.06 minutes" [1] "Average Cal: 8.98 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.1 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 52 61 0.04275422 0.04901586 0.04658170 3 -11.32304 93.937333 3 4 62 71 0.04971123 0.05602911 0.05355266 3 63.50995 -67.299654 4 3 72 80 0.05672454 0.06298498 0.06228937 3 37.79379 5.934693 6 4 343 352 0.25150200 0.25776157 0.25532711 2 63.77074 -63.146002 7 2 353 362 0.25845703 0.26471644 0.26228198 2 -11.79104 95.540093 10 2 637 646 0.46038550 0.46667894 0.46423166 3 -11.70228 94.620104 11 4 647 656 0.46737847 0.47367179 0.47122416 3 63.87143 -66.095076 12 3 657 666 0.47437231 0.48066936 0.47962060 3 37.89477 2.721095 14 4 924 932 0.66882228 0.67511759 0.67281895 2 64.14937 -67.270378 15 2 933 942 0.67581794 0.68211071 0.67966368 2 -12.98875 91.403270 17 2 1217 1226 0.87727769 0.88357086 0.88112316 3 -12.58375 96.609198 18 4 1227 1236 0.88427083 0.89056545 0.88811770 3 64.11508 -64.988480 19 5 1237 1246 0.89126487 0.89755802 0.89650927 NA 30.54397 -11.440888 20 3 1247 1256 0.89825793 0.90455324 0.90350363 3 37.80796 9.645897 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.255237 1.242335 8.045255e-04 -0.55269955 0.005485466 3.5077186 3 1.255297 1.242342 6.849719e-03 -0.46867757 0.020522085 2.4681321 4 1.255158 1.242165 -3.096463e-05 0.27160240 0.011006625 1.7167272 6 1.259095 1.246421 2.045036e-03 -0.71320055 0.006627311 2.8731579 7 1.259471 1.246793 -3.208396e-03 -0.97218439 0.010565587 3.6971947 10 1.264582 1.251891 -2.004081e-03 -0.63159205 0.009806100 2.4211346 11 1.264607 1.251910 5.311012e-04 -0.19207140 0.005435646 2.7645417 12 1.264676 1.252002 3.757710e-03 -1.90482293 0.013610081 3.1015692 14 1.270015 1.253968 -8.344845e-03 -0.02373133 0.029055077 16.2526948 15 1.269666 1.254132 -9.973481e-03 -1.09292107 0.027699137 7.3806373 17 1.268848 1.254947 -2.309698e-02 -0.15613079 0.057043471 1.4638938 18 1.268537 1.254866 6.797464e-03 1.27441055 0.019831285 3.8371766 19 1.268655 1.255238 6.733554e-02 0.26680715 0.047950679 0.4965668 20 1.268781 1.255556 6.500413e-03 -0.25162003 0.018107255 0.4776600 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.288 co2l1 = 0.409 co2l0 = 0.096" [1] "co2l0 = -97.72 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "87 out of 341 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "254 out of 1186 1-min values rejected as stack air" [1] "223 out of 1131 Line 1 1-min values rejected as stack air" [1] "31 out of 55 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"