[1] "2025-04-29 17:52:55 MDT" [1] "1301" "130128" "d028" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130128a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85776 63 [1] 85776 [1] 85776 [1] "testing skipping spike filter" [1] 85776 [1] 85776 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:52:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.8" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 3 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "87 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.791, ave o2scale2 = 0.8" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 3 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "88 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:53:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:53:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:53:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:53:10 MDT" [1] "reading in recalculated plot titles" [1] "Removed 88 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1339 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:53:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.414 co2off = 389.04 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.55 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 99 104 0.07379829 0.07727572 0.07623249 2 63.19791 -66.417245 3 2 105 114 0.07797121 0.08423495 0.08180051 2 -11.51603 99.750175 4 5 115 124 0.08493056 0.09119065 0.09014745 NA 29.79475 -14.584025 6 2 389 398 0.27968866 0.28594809 0.28351411 3 -12.92901 99.255521 7 4 399 408 0.28664352 0.29290683 0.29047169 3 63.41060 -64.991278 8 3 409 418 0.29360220 0.29986215 0.29881849 3 37.13913 3.037084 13 4 746 755 0.58231363 0.58857639 0.58614220 2 63.19362 -58.608309 14 2 756 765 0.58927199 0.59553128 0.59309702 2 -11.11321 97.036653 16 2 1045 1054 0.79099604 0.79725521 0.79482096 3 -11.87402 96.882524 17 4 1055 1062 0.79795052 0.80281872 0.80108018 3 63.35210 -62.566085 18 3 1063 1072 0.80490909 0.81117190 0.81012877 3 37.34604 11.414334 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.262799 1.250106 -0.001597657 -0.665011930 0.00439534 1.560185 3 1.262805 1.250089 0.009520985 0.705507197 0.02585064 2.597233 4 1.262276 1.249485 0.057423435 0.779461088 0.04065864 3.561980 6 1.260422 1.247617 -0.021325848 0.004795575 0.05342340 3.365195 7 1.260512 1.247805 0.010057515 0.667736479 0.02609151 3.988041 8 1.260718 1.248002 0.009106905 -2.148635636 0.02284513 4.215494 13 1.264479 1.250546 -0.010052713 1.565467252 0.02514689 7.218888 14 1.264213 1.250524 -0.021395167 -0.037435774 0.05349841 3.931135 16 1.267203 1.253212 -0.041680777 0.731028461 0.10241196 3.846116 17 1.266813 1.253009 0.006990277 -0.029897165 0.01771787 1.791918 18 1.266684 1.253142 0.008222761 -0.133066432 0.02034008 2.701475 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.246 co2l1 = 0.413 co2l0 = 0.118" [1] "co2l0 = -98.36 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "46 out of 90 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "44 out of 1161 1-min values rejected as stack air" [1] "44 out of 1161 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"