[1] "2025-04-29 17:52:17 MDT" [1] "1301" "130127" "d027" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130127a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:52:21 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.788, ave o2scale2 = 0.797" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "213 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.788, ave o2scale2 = 0.797" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "214 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:52:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:52:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:52:39 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:52:41 MDT" [1] "reading in recalculated plot titles" [1] "Removed 214 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1222 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:52:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.407 co2off = 389.22 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.73 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 calibration row(s) with high SL" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 37 46 0.02743293 0.03369268 0.03125862 3 -13.86333 102.42571 3 4 47 56 0.03438814 0.04064748 0.03821329 3 63.37445 -59.82417 4 3 57 64 0.04134277 0.04621102 0.04586335 3 36.91425 10.84445 6 4 330 339 0.23618316 0.24244323 0.24000892 2 63.17272 -52.37843 7 2 340 349 0.24313869 0.24939815 0.24696396 2 -12.91877 92.20797 9 2 560 567 0.44487963 0.45044719 0.44836099 2 -12.87776 97.22305 10 4 568 571 0.45184144 0.45392798 0.45358027 2 63.32056 -67.52311 14 4 760 769 0.65359534 0.65985796 0.65742398 2 63.27590 -62.90622 15 2 770 779 0.66055668 0.66681626 0.66438230 2 -13.32033 95.21944 17 2 1042 1051 0.86230420 0.86856690 0.86613173 3 -12.42573 94.65451 18 4 1052 1061 0.86926224 0.87552546 0.87309107 3 63.23661 -66.94251 19 3 1062 1070 0.87622089 0.88248148 0.88155428 3 37.12544 11.56915 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.273802 1.259433 -0.0108022781 4.0621550 0.02820601 10.023708 3 1.273415 1.259164 0.0011775538 0.4010332 0.00860631 8.555202 4 1.273503 1.259166 0.0141406624 11.2792517 0.02705021 7.985937 6 1.270288 1.255879 -0.0048692562 -4.5179595 0.01243142 18.372776 7 1.269983 1.255600 -0.0236550357 -0.2248623 0.05935297 2.282304 9 1.268265 1.253920 0.0268097650 1.0579876 0.06390857 5.698708 10 1.268377 1.254090 0.0260880419 -4.5671053 0.01847316 3.234006 14 1.267604 1.255998 0.0058745357 -0.7706793 0.01647417 2.464598 15 1.267805 1.256198 -0.0253808153 0.2567786 0.06274823 2.520268 17 1.266237 1.254037 -0.0139569111 0.9360720 0.03604568 2.499684 18 1.266173 1.253944 0.0063104522 0.2041868 0.01726542 1.185030 19 1.266004 1.253737 -0.0001672525 1.3136867 0.00700827 2.126578 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.655 co2l1 = 0.407 co2l0 = 0.113" [1] "co2l0 = -98.49 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "137 out of 265 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "128 out of 1062 1-min values rejected as stack air" [1] "128 out of 1062 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"