[1] "2025-04-29 17:51:35 MDT" [1] "1301" "130126" "d026" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130126a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:51:39 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.776, ave o2scale2 = 0.784" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "18 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.776, ave o2scale2 = 0.784" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "18 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:51:39 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:51:39 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:51:58 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:51:59 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1418 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:52:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.399 co2off = 385.67 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 273 282 0.1926978 0.1989569 0.1965227 3 -15.16905 91.895487 3 4 283 292 0.1996524 0.2059116 0.2034774 3 63.66519 -61.812282 4 5 293 302 0.2066070 0.2128704 0.2118253 NA 29.85428 -8.959644 5 3 303 312 0.2135659 0.2198250 0.2187817 3 36.70146 9.025869 7 4 573 582 0.4013864 0.4076455 0.4052113 2 63.46667 -65.293683 8 2 583 592 0.4083408 0.4146019 0.4121667 2 -14.91103 100.086403 10 2 868 877 0.6100775 0.6163368 0.6139025 3 -13.89727 100.415565 11 4 878 886 0.6170323 0.6232917 0.6212052 3 63.33382 -64.942847 12 3 887 896 0.6239872 0.6302500 0.6292067 3 36.70309 8.165849 14 4 1162 1171 0.8187724 0.8250352 0.8226002 2 63.50287 -62.983325 15 2 1172 1181 0.8257305 0.8319899 0.8295557 2 -14.12571 97.034478 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.297297 1.282955 0.0144197160 -1.59742016 0.035737096 7.794656 3 1.297240 1.282805 0.0056386131 -1.38664010 0.015927465 5.855977 4 1.297296 1.282824 0.0453618968 12.01901536 0.032129164 16.290290 5 1.296979 1.282501 0.0050982875 2.22263723 0.022326862 3.768847 7 1.292388 1.278113 0.0016061543 -0.08429785 0.006216764 4.689112 8 1.292111 1.277855 -0.0229158706 -0.15608178 0.059880051 4.299363 10 1.287517 1.273130 0.0065317532 -1.18096907 0.022070118 6.600131 11 1.286840 1.272536 0.0008178270 1.05108731 0.008006950 6.928764 12 1.286213 1.271951 -0.0073973521 4.40794345 0.020479356 6.404326 14 1.280354 1.266241 -0.0020537967 -0.27103245 0.007672818 3.441803 15 1.280435 1.266211 -0.0006262985 -1.95413477 0.009557447 5.930695 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.123 co2l1 = 0.398 co2l0 = 0.122" [1] "co2l0 = -98.27 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "20 out of 70 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "50 out of 1253 1-min values rejected as stack air" [1] "50 out of 1253 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"