[1] "2025-04-29 17:50:13 MDT" [1] "1301" "130124" "d024" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130124a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:50:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.784" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "45 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.784" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "47 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:50:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:50:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:50:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:50:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 47 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1389 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:50:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.396 co2off = 385.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.62 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 148 157 0.1050879 0.1113472 0.1089131 3 -15.59686 94.517006 3 4 158 167 0.1120428 0.1183023 0.1158683 3 63.22004 -62.523806 4 3 168 177 0.1189978 0.1252616 0.1242182 3 36.17583 5.912993 6 4 444 452 0.3137894 0.3193565 0.3172688 2 63.12769 -65.758370 7 2 453 462 0.3207477 0.3270069 0.3245727 2 -14.67484 96.512347 8 5 463 472 0.3277025 0.3339666 0.3329218 NA 28.99047 -11.377018 10 2 740 749 0.5225926 0.5288577 0.5264210 3 -14.55308 95.127864 11 4 750 759 0.5295544 0.5358180 0.5333817 3 62.98805 -68.013608 12 3 760 769 0.5365145 0.5427773 0.5417335 3 36.25531 4.886559 14 4 1029 1038 0.7314549 0.7377200 0.7352834 2 63.22723 -66.715271 15 2 1039 1048 0.7384167 0.7446801 0.7422446 2 -15.28631 93.748446 17 2 1311 1320 0.9403924 0.9466575 0.9442210 3 -16.13008 96.779536 18 4 1321 1330 0.9473543 0.9536181 0.9511821 3 63.36816 -65.205517 19 5 1331 1340 0.9543146 0.9605787 0.9595346 NA 28.72153 -10.913987 20 3 1341 1345 0.9647554 0.9675394 0.9682356 3 36.13504 38.800732 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.292175 1.280900 1.766016e-05 0.4654036 0.0078267192 2.362037 3 1.291542 1.280248 4.826819e-03 0.1009085 0.0172969708 2.252368 4 1.291148 1.279812 -9.689866e-04 -4.0819293 0.0134982121 5.380267 6 1.283091 1.271023 9.000452e-03 -0.1333650 0.0207254184 1.923843 7 1.282814 1.270764 -2.890553e-03 0.4004879 0.0126877392 3.214533 8 1.282436 1.270416 5.174566e-02 -1.5148694 0.0366369701 2.696050 10 1.281082 1.267855 -2.272735e-02 0.8764989 0.0558641703 5.273972 11 1.281116 1.267955 9.880832e-03 0.5040978 0.0300418189 4.684545 12 1.281575 1.268516 1.819358e-03 3.6458276 0.0066403965 4.870650 14 1.289271 1.277731 -8.727202e-03 -0.6254414 0.0245121770 2.007297 15 1.289517 1.277993 4.609318e-03 -0.9335013 0.0166500885 3.298571 17 1.293618 1.281945 -3.656375e-03 0.8295562 0.0129447120 2.831033 18 1.293524 1.281965 3.935218e-03 0.2637735 0.0188931718 3.849396 19 1.293600 1.282110 4.507856e-02 1.2364461 0.0319523877 1.600536 20 1.294071 1.282635 -1.247047e-04 24.7377845 0.0003145764 27.143226 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.386 co2l1 = 0.396 co2l0 = 0.128" [1] "co2l0 = -98.21 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "236 out of 440 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "204 out of 1188 1-min values rejected as stack air" [1] "204 out of 1188 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"