[1] "2025-04-29 17:49:28 MDT" [1] "1301" "130123" "d023" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130123a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:49:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.778" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:49:33 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:49:33 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:49:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:49:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1418 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:50:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.391 co2off = 375.54 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 87 96 0.06164123 0.06790090 0.06546683 1 63.08351 -64.200223 4 5 106 115 0.07555179 0.08181082 0.08076770 NA 26.70569 -12.423572 6 2 386 395 0.27035634 0.27661539 0.27418122 3 -16.23640 92.976237 7 4 396 405 0.27731076 0.28356970 0.28113575 3 63.24200 -62.581398 8 3 406 415 0.28426510 0.29052491 0.28948184 3 35.98396 8.635045 10 4 682 691 0.47902514 0.48528414 0.48285005 2 63.33289 -67.208123 11 2 692 701 0.48597975 0.49223938 0.48980507 2 -16.40012 94.848315 15 2 977 986 0.68769641 0.69395943 0.69152249 3 -16.06181 95.447854 16 4 987 996 0.69465492 0.70091782 0.69848162 3 63.29534 -64.923991 17 5 997 1006 0.70161331 0.70787269 0.70682941 NA 28.06544 -9.425589 18 3 1007 1016 0.70856829 0.71482769 0.71378422 3 35.95559 5.801516 20 4 1271 1280 0.89636950 0.90263226 0.90019833 2 63.41317 -62.970105 21 2 1281 1289 0.90332769 0.90959034 0.90720563 2 -15.94790 97.027723 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.292288 1.280875 0.0025163379 0.07498224 0.008572266 2.0094912 4 1.293554 1.281121 0.0825081135 6.57320312 0.058424698 8.8562721 6 1.295915 1.284603 0.0007275347 0.97232534 0.018815271 4.3586028 7 1.295863 1.284549 0.0012705272 0.61859445 0.011935653 1.8883140 8 1.296159 1.284847 0.0049678675 2.07972810 0.018944702 3.3198673 10 1.299455 1.287675 0.0020874708 -0.24497237 0.009531711 3.1626643 11 1.299625 1.287827 -0.0024867276 0.00673185 0.021239636 3.3490818 15 1.299824 1.288744 -0.0082820061 0.46302262 0.022106908 1.6988127 16 1.299693 1.288610 0.0034916404 -0.42178638 0.016901798 1.4186636 17 1.299847 1.288785 0.0547836938 0.01141767 0.038802485 1.5745853 18 1.299783 1.288737 -0.0029690536 -0.50946091 0.012740149 0.9539761 20 1.299412 1.287636 -0.0018454379 0.16671662 0.006552139 2.0000509 21 1.299345 1.287656 0.0047305726 0.88992466 0.015040311 3.3768049 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.66 co2l1 = 0.391 co2l0 = 0.136" [1] "co2l0 = -98.02 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "176 out of 514 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "338 out of 1224 1-min values rejected as stack air" [1] "283 out of 1166 Line 1 1-min values rejected as stack air" [1] "55 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"