[1] "2025-04-29 17:48:41 MDT" [1] "1301" "130122" "d022" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130122a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:48:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.785" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "4 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.785" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "4 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:48:46 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:48:46 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:49:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:49:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 4 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1432 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:49:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.397 co2off = 380.54 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.11 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 25 34 0.01801273 0.02430437 0.02187011 3 -15.09237 94.554562 3 4 35 44 0.02499968 0.03125926 0.02882502 3 62.70687 -65.964430 4 3 45 54 0.03195486 0.03828125 0.03722242 3 35.93933 4.818397 6 4 322 331 0.22685969 0.23311921 0.23068501 2 62.77894 -61.156237 7 2 332 341 0.23381476 0.24007755 0.23764243 2 -14.91559 94.108873 9 2 622 631 0.43554398 0.44180718 0.43937311 3 -15.19591 97.734235 10 4 632 641 0.44250281 0.44876264 0.44632829 3 62.91859 -66.826040 11 5 642 651 0.44945804 0.45572109 0.45467794 NA 27.07206 -11.127241 12 3 652 661 0.45641675 0.46267610 0.46163307 3 36.14804 7.152451 14 4 922 931 0.64424077 0.65050000 0.64806601 2 63.06754 -64.337246 15 2 932 941 0.65119566 0.65745521 0.65502103 2 -15.26955 94.423371 17 2 1221 1230 0.85292269 0.85918553 0.85674899 3 -15.59383 94.193844 18 4 1231 1240 0.85988087 0.86614413 0.86370816 3 63.08048 -64.500349 19 3 1241 1250 0.86683950 0.87309870 0.87205564 3 36.02477 2.904396 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.280573 1.268688 -0.006769173 -0.52987606 0.018035507 3.516346 3 1.280310 1.268427 0.007749353 -0.10516019 0.020320986 1.394226 4 1.280432 1.268562 0.003691397 1.49701007 0.010152946 2.051701 6 1.283737 1.270444 0.006816269 2.39328127 0.017945385 7.201736 7 1.283687 1.270621 -0.017757442 0.34420047 0.045682742 2.454011 9 1.284251 1.272437 0.009099359 0.01803393 0.022399827 2.259540 10 1.284262 1.272470 -0.001065090 -0.20628436 0.005639070 1.455761 11 1.284493 1.272711 0.081748970 2.44124699 0.057894368 3.524405 12 1.284451 1.272698 0.005949147 4.56811117 0.018379189 5.999732 14 1.286503 1.274875 0.002188056 0.48743414 0.007737384 2.886159 15 1.286622 1.275003 -0.002489135 0.35120003 0.012831051 2.441911 17 1.289758 1.278065 -0.001264892 0.58191875 0.010587051 2.031836 18 1.289662 1.277994 0.004419501 0.13761142 0.012688742 1.184503 19 1.289673 1.278037 0.002433144 -2.61311060 0.007077531 4.034813 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.398 co2l1 = 0.397 co2l0 = 0.127" [1] "co2l0 = -97.88 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "332 out of 750 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "418 out of 1250 1-min values rejected as stack air" [1] "418 out of 1250 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"