[1] "2025-04-29 17:47:58 MDT" [1] "1301" "130121" "d021" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130121a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:48:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.783, ave o2scale2 = 0.79" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "19 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.783, ave o2scale2 = 0.79" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "19 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:48:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:48:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:48:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:48:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1417 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:48:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.7" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.403 co2off = 380.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 260 269 0.1832223 0.1894820 0.1870476 3 -14.44481 94.971636 3 4 270 279 0.1901774 0.1964372 0.1940027 3 62.61950 -62.250343 4 5 280 289 0.1971326 0.2033916 0.2023486 NA 29.53303 -15.171170 5 3 290 299 0.2040870 0.2103490 0.2093053 3 36.14480 3.135166 7 4 557 566 0.3919419 0.3982010 0.3957668 2 62.47891 -65.618520 8 2 567 576 0.3988963 0.4051556 0.4027215 2 -13.68145 95.556693 10 2 854 863 0.6006377 0.6068970 0.6044629 3 -14.54014 93.699233 11 4 864 873 0.6075926 0.6138523 0.6114179 3 62.68465 -66.603917 12 3 874 883 0.6145476 0.6208074 0.6197638 3 36.15979 4.503271 14 4 1150 1159 0.8093310 0.8155903 0.8131561 2 62.74377 -64.890211 15 2 1160 1169 0.8162857 0.8225451 0.8201108 2 -14.85852 92.658847 16 5 1170 1179 0.8232406 0.8295035 0.8284601 NA 28.23612 -11.823735 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.277459 1.264610 -0.0148451487 0.5264624 0.039482634 2.079206 3 1.277425 1.264655 0.0005794212 0.7018237 0.007879888 2.913144 4 1.277518 1.264855 0.0398843209 -0.7513265 0.028240077 1.178064 5 1.277319 1.264743 0.0087348893 -0.4216715 0.025311998 2.972772 7 1.276783 1.264757 -0.0018185875 0.1470320 0.006185651 2.574605 8 1.276619 1.264588 -0.0311004703 0.8719999 0.076807784 2.643013 10 1.276287 1.264192 -0.0143324231 1.6183552 0.040748257 5.334203 11 1.276112 1.264022 0.0087051604 0.6793852 0.035881516 2.361827 12 1.276245 1.264174 0.0074435287 1.9296779 0.018701006 2.641505 14 1.280262 1.267127 -0.0035100469 -0.2959143 0.009728671 3.068913 15 1.280181 1.267170 -0.0163072629 0.5215814 0.042354817 4.298806 16 1.280027 1.267144 0.0618968386 -1.2811497 0.043840620 2.240925 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.139 co2l1 = 0.403 co2l0 = 0.122" [1] "co2l0 = -97.72 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "149 out of 795 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "646 out of 1250 1-min values rejected as stack air" [1] "646 out of 1250 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"