[1] "2025-04-29 17:47:17 MDT" [1] "1301" "130120" "d020" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130120a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:47:21 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.78, ave o2scale2 = 0.788" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:47:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:47:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:47:40 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:47:41 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1414 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:47:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.403 co2off = 380.29 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.86 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 192 201 0.1397183 0.1459774 0.1435433 2 62.36311 -60.429648 3 2 202 211 0.1466729 0.1529329 0.1504987 2 -14.33647 96.157187 5 2 490 499 0.3484132 0.3546759 0.3522406 3 -14.14289 96.951174 6 4 500 509 0.3553715 0.3616308 0.3591965 3 62.45648 -64.471384 7 3 510 519 0.3623264 0.3685856 0.3675423 3 35.98865 5.216789 9 4 781 790 0.5570984 0.5633577 0.5609233 2 62.57210 -62.784497 10 2 791 800 0.5640531 0.5703124 0.5678781 2 -14.32659 94.045741 11 5 801 810 0.5710077 0.5772674 0.5762240 NA 29.28950 -8.295118 13 2 1081 1090 0.7657940 0.7720538 0.7696199 3 -14.60582 98.220066 14 4 1091 1100 0.7727493 0.7790085 0.7765744 3 62.64591 -64.467546 15 3 1101 1109 0.7797037 0.7859630 0.7852676 3 36.09066 8.943938 17 4 1380 1388 0.9744636 0.9800277 0.9779409 2 62.63679 -68.369889 18 2 1389 1397 0.9821137 0.9876775 0.9855911 2 -14.69987 95.233384 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.282396 1.269242 0.0025124842 1.34556426 0.012707639 5.831778 3 1.282233 1.269224 -0.0054562112 -0.74515080 0.017200012 3.805870 5 1.281419 1.269755 -0.0250367242 -0.50364619 0.061803790 2.356948 6 1.281347 1.269695 0.0027866433 0.52419773 0.010552163 2.329778 7 1.281377 1.269741 -0.0004125043 0.58832394 0.006094214 0.834746 9 1.283602 1.271142 0.0011631818 0.04209078 0.015091127 1.286473 10 1.283499 1.271176 0.0022972064 -0.95152472 0.008539104 3.466553 11 1.283405 1.271170 0.0469257010 1.27216836 0.033234019 1.910761 13 1.280344 1.268573 -0.0129949652 -0.01432201 0.031948540 3.545043 14 1.280128 1.268379 0.0160943687 0.39997182 0.041246915 2.534971 15 1.282487 1.268356 0.0046694358 6.54277492 0.011119199 7.653177 17 1.277545 1.265675 -0.0080494658 1.09526127 0.018820621 2.575544 18 1.277837 1.266002 -0.0066647870 -1.05299444 0.020436289 2.635272 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.159 co2l1 = 0.403 co2l0 = 0.135" [1] "co2l0 = -98.07 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "227 out of 700 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "473 out of 1235 1-min values rejected as stack air" [1] "473 out of 1235 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"