[1] "2025-04-29 17:46:33 MDT" [1] "1301" "130119" "d019" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130119a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:46:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "23 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.782" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "23 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:46:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:46:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:46:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:46:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 23 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1413 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:47:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.397 co2off = 393.73 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 137 146 0.09614705 0.1024071 0.09997278 3 -16.62469 97.199852 3 4 147 156 0.10310246 0.1093623 0.10692772 3 62.69912 -66.124472 4 3 157 166 0.11005778 0.1163171 0.11527376 3 35.45980 7.885016 6 4 425 434 0.30481484 0.3110745 0.30864013 2 62.54555 -63.588449 7 2 435 444 0.31176982 0.3180295 0.31559513 2 -15.92991 92.684485 8 5 445 454 0.31872506 0.3249841 0.32394100 NA 28.84163 -12.216250 10 2 722 731 0.51348845 0.5197477 0.51731353 3 -15.66659 93.443480 11 4 732 736 0.52044329 0.5267027 0.52484811 3 62.50910 -68.913067 12 3 737 746 0.52739818 0.5336614 0.53261834 3 35.57429 5.810468 14 4 1014 1023 0.72216768 0.7284305 0.72599470 2 62.51821 -62.008400 15 2 1024 1033 0.72912598 0.7353852 0.73295085 2 -15.49532 95.651199 17 2 1314 1323 0.93084757 0.9371072 0.93467269 3 -15.10747 90.882829 18 4 1324 1333 0.93780252 0.9440659 0.94162850 3 62.37048 -65.698819 19 5 1334 1343 0.94476131 0.9510243 0.94998097 NA 28.93747 -12.465841 20 3 1344 1353 0.95171991 0.9579792 0.95693585 3 35.76647 6.037500 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.297569 1.286944 -0.0023458863 0.16841568 0.010016393 1.3533653 3 1.297543 1.286931 0.0018606791 -1.74541061 0.015550122 4.6027125 4 1.297530 1.286914 0.0048251328 3.22665310 0.013293285 4.2525978 6 1.296009 1.284230 0.0037707012 0.15440972 0.010108880 2.5818494 7 1.295858 1.284188 -0.0000452813 -0.18935325 0.008542432 1.9271482 8 1.295429 1.283856 0.0516832425 0.06981767 0.036592776 3.0327723 10 1.290563 1.279581 -0.0187535180 -1.17053436 0.047660244 3.8630608 11 1.290282 1.279323 0.0046013982 -0.29572046 0.017512969 1.1311974 12 1.290359 1.279392 0.0051817099 -1.33071394 0.014440338 2.1540206 14 1.287497 1.274345 -0.0010530216 1.79100220 0.003069860 5.0655432 15 1.287186 1.274213 -0.0001239672 0.60323614 0.014534420 3.6938488 17 1.283137 1.271632 0.0119432974 -1.05199670 0.030052744 3.3414691 18 1.283019 1.271496 0.0026630614 -0.42436580 0.011491939 3.0376142 19 1.282952 1.271427 0.0477329451 -0.08542788 0.033808543 0.6309252 20 1.282678 1.271130 -0.0023699376 -1.90033353 0.009900622 2.5238379 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.603 co2l1 = 0.397 co2l0 = 0.137" [1] "co2l0 = -97.82 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "245 out of 521 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "276 out of 1211 1-min values rejected as stack air" [1] "276 out of 1211 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"