[1] "2025-04-29 17:45:08 MDT" [1] "1301" "130117" "d017" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130117a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:45:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.772, ave o2scale2 = 0.779" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.772, ave o2scale2 = 0.779" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:45:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:45:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:45:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:45:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1421 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:45:45 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.397 co2off = 380.72 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 12 21 0.009127315 0.01538657 0.01295239 3 -16.23114 92.918016 3 4 22 31 0.016082031 0.02234291 0.01990736 3 62.44982 -66.954012 4 3 32 41 0.023042766 0.02930891 0.02826560 3 35.37845 10.299970 6 4 311 320 0.217880845 0.22414045 0.22170641 2 62.39303 -62.384153 7 2 321 330 0.224835793 0.23109572 0.22866144 2 -15.67499 96.010702 9 2 611 620 0.426598003 0.43285723 0.43042296 3 -15.50956 93.911633 10 4 621 630 0.433552604 0.43981169 0.43737770 3 62.41315 -64.696933 11 5 631 640 0.440507031 0.44676655 0.44572347 NA 30.25344 -10.662319 12 3 641 650 0.447461834 0.45372219 0.45267882 3 35.67525 3.854375 14 4 911 920 0.635291696 0.64155098 0.63911697 2 62.38893 -66.195951 15 2 921 930 0.642246528 0.64850584 0.64607172 2 -15.70315 93.963441 17 2 1200 1209 0.843637066 0.84989682 0.84746225 3 -15.31604 94.698162 18 4 1210 1219 0.850592216 0.85685095 0.85441704 3 62.53088 -66.236782 19 3 1220 1229 0.857546412 0.86380616 0.86276306 3 35.92005 3.103418 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.296492 1.285372 0.0066033891 -0.23257669 0.021483713 2.2278191 3 1.296381 1.285282 0.0055087499 -0.95282413 0.015575509 2.6885139 4 1.296347 1.285223 0.0025135602 4.64161625 0.014665407 6.0860519 6 1.297074 1.284915 -0.0004890098 1.32748864 0.006568067 3.8498502 7 1.296933 1.284987 0.0007062717 0.23036693 0.018445638 3.0845174 9 1.295179 1.284098 -0.0045598934 -0.44302444 0.014088131 2.3117020 10 1.295147 1.284088 -0.0030259606 -0.72446050 0.016784245 2.3184557 11 1.295294 1.284247 0.0285845053 -2.10851479 0.020240932 2.8190603 12 1.295158 1.284091 0.0040857585 3.72271097 0.016258995 5.2426889 14 1.293693 1.282417 -0.0073679869 0.03596937 0.019553539 2.9861811 15 1.293482 1.282181 -0.0201830876 0.58774135 0.052436536 3.5257526 17 1.294278 1.283035 0.0363473505 0.23510520 0.090651763 2.0159135 18 1.294380 1.283144 -0.0110597013 -0.10436317 0.032780758 2.0077229 19 1.294311 1.283061 -0.0010354965 0.04221140 0.007882490 0.2605873 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.583 co2l1 = 0.397 co2l0 = 0.126" [1] "co2l0 = -97.79 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "42 out of 110 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "68 out of 1239 1-min values rejected as stack air" [1] "68 out of 1239 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"