[1] "2025-04-29 17:44:14 MDT" [1] "1301" "130116" "d016" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130116a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:44:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.773, ave o2scale2 = 0.78" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.773, ave o2scale2 = 0.78" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:44:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:44:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:44:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:44:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:45:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -542.9" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.396 co2off = 380.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 248 257 0.1743095 0.1805727 0.1781378 3 -15.92425 95.918469 3 4 258 267 0.1812680 0.1875313 0.1850968 3 62.21837 -66.684481 4 5 268 277 0.1882264 0.1944861 0.1934428 NA 29.01591 -14.569835 5 3 278 287 0.1951817 0.2014410 0.2003979 3 35.36669 6.851670 7 4 548 557 0.3830194 0.3892940 0.3868544 2 62.32809 -63.731564 8 2 558 567 0.3899906 0.3962500 0.3938155 2 -16.22884 96.418985 10 2 848 857 0.5917185 0.5979780 0.5955436 3 -16.05195 96.284637 11 4 858 867 0.5986735 0.6049364 0.6025020 3 62.39421 -62.180371 12 3 868 877 0.6056327 0.6118947 0.6108514 3 35.52072 2.959114 14 4 1148 1157 0.8004357 0.8066949 0.8042609 2 62.40907 -63.577509 15 2 1158 1167 0.8073902 0.8136497 0.8112156 2 -16.10521 98.233860 16 5 1168 1177 0.8143451 0.8206047 0.8195612 NA 29.38897 -14.601703 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.291642 1.280231 -0.013947853 -0.09512871 0.034597688 1.3715911 3 1.291539 1.280132 0.003419842 0.71744489 0.019642735 2.9039925 4 1.291721 1.280330 0.047608153 0.09941367 0.033720155 0.8756396 5 1.291801 1.280401 0.006225952 -1.75560010 0.020925676 2.6841880 7 1.293879 1.282597 -0.005579492 0.23761660 0.014263465 4.1778055 8 1.293789 1.282527 -0.015046773 1.09547340 0.039089483 3.5166177 10 1.294669 1.283402 0.002854249 0.31178956 0.009362238 3.9685846 11 1.294898 1.283629 0.008196703 0.03595624 0.022097969 3.3687754 12 1.295074 1.283804 0.008407610 -2.25522943 0.020910977 3.0533940 14 1.295826 1.284659 0.008293579 0.36545275 0.022390419 2.1970004 15 1.296092 1.284980 -0.003766146 0.12613258 0.019888190 4.2438371 16 1.296436 1.285271 0.048968643 2.73458695 0.034692426 3.6832157 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.709 co2l1 = 0.396 co2l0 = 0.126" [1] "co2l0 = -98.07 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "64 out of 202 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "138 out of 1267 1-min values rejected as stack air" [1] "138 out of 1267 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"