[1] "2025-04-29 17:40:57 MDT" [1] "1301" "130112" "d012" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130112a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:41:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.786" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.786" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:41:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:41:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:41:17 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:41:18 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1423 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:41:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.401 co2off = 375.46 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.07 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.0008660609 0.00647011 0.004383941 3 -15.95322 95.696361 2 4 10 19 0.0071655093 0.01342899 0.010993406 3 61.32795 -62.843322 3 3 20 29 0.0141243345 0.02038738 0.019344242 3 34.70940 6.565953 5 4 300 309 0.2089692998 0.21522908 0.212794629 2 61.34119 -64.182557 6 2 310 319 0.2159244213 0.22218750 0.219752951 2 -14.76277 95.532281 8 2 600 608 0.4176667245 0.42392682 0.421542105 3 -15.54808 93.870466 9 4 609 618 0.4246221354 0.43088194 0.428447378 3 61.48920 -60.920268 10 5 619 628 0.4315773727 0.43783686 0.436793432 NA 28.59756 -9.846619 11 3 629 638 0.4385324074 0.44479175 0.443748452 3 35.04261 7.794978 13 4 899 908 0.6263343750 0.63259375 0.630159545 2 61.70109 -63.292204 14 2 909 918 0.6332893519 0.63954855 0.637114283 2 -16.36611 91.728235 16 2 1195 1202 0.8350057870 0.84126513 0.839062785 3 -16.72642 94.760945 17 4 1203 1209 0.8419608218 0.84821997 0.846829115 3 61.70717 -63.123364 18 3 1210 1219 0.8489155961 0.85517483 0.854131850 3 34.75613 1.888324 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.278582 1.266271 -0.0006039979 -0.05786653 0.005048831 2.7504024 2 1.278336 1.265986 0.0021923475 0.34735811 0.015401778 2.6689867 3 1.278204 1.265854 0.0077859785 1.53564986 0.019809611 3.1295570 5 1.279564 1.267289 -0.0041703330 0.07440663 0.011858212 2.1213612 6 1.279725 1.267439 0.0060954365 -0.30698631 0.016085845 2.1357807 8 1.281821 1.269611 0.0005115221 1.41006733 0.013930521 5.5668678 9 1.281871 1.269705 0.0080998017 -0.49121385 0.023102686 3.0144376 10 1.282242 1.270106 0.0510314424 0.16332890 0.036150834 0.7717304 11 1.282283 1.270162 -0.0005155517 -1.80802844 0.005008893 2.5472654 13 1.286563 1.274806 0.0020118041 0.46074240 0.005783289 1.4967508 14 1.286932 1.275221 0.0112222954 -0.87513954 0.033508424 2.5822712 16 1.291853 1.280543 -0.0058300033 -0.38369402 0.023650736 2.7593210 17 1.291915 1.280571 0.0140632844 1.34726556 0.022925035 2.4181639 18 1.292146 1.280812 0.0062182605 -0.87809830 0.017186329 1.2188283 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.719 co2l1 = 0.401 co2l0 = 0.139" [1] "co2l0 = -98 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "102 out of 210 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "108 out of 1250 1-min values rejected as stack air" [1] "108 out of 1250 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"