[1] "2025-04-29 17:40:32 MDT" [1] "1301" "130111" "d011" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130111a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:40:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.781, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "40 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.781, ave o2scale2 = 0.788" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "39 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:40:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:40:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:40:46 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:40:47 MDT" [1] "reading in recalculated plot titles" [1] "Removed 39 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 503 row(s) with high PFRIDGE" [1] "TEMP: 893 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:40:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.415 co2off = 370.14 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.65 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 10 0.1654190 0.1716784 0.1692443 3 -9.472047 204.731024 2 4 11 20 0.1723738 0.1786372 0.1762009 3 66.867391 46.459263 3 3 21 30 0.1862874 0.1925466 0.1915035 3 40.610883 113.989942 4 4 31 40 0.3741135 0.3803727 0.3779388 2 66.755156 46.138875 5 2 41 46 0.3810683 0.3845498 0.3835064 2 -8.768844 204.485341 9 2 294 303 0.5828646 0.5891238 0.5866899 3 -15.695992 107.093102 10 4 304 313 0.5898194 0.5960790 0.5936448 3 61.351961 -52.387546 11 3 314 323 0.5967744 0.6030337 0.6019905 3 34.868305 15.763227 13 4 594 603 0.7915499 0.7978127 0.7953767 2 61.385352 -63.403672 14 2 604 613 0.7985081 0.8047677 0.8023334 2 -16.040883 98.527705 15 5 614 623 0.8054630 0.8117223 0.8106790 NA 23.868094 -9.840859 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.284851 1.272945 -0.0013477168 -0.2738413 0.015656174 0.7721696 2 1.284543 1.272672 0.0047445021 -0.9035414 0.013481293 2.8042583 3 1.284001 1.272098 0.0031004435 0.4685835 0.008255912 2.1354474 4 1.280670 1.268544 0.0029825286 -1.3339066 0.011480233 3.9660022 5 1.280748 1.268621 -0.0116931826 -0.0459204 0.017037145 0.3142304 9 1.279265 1.266987 0.0071342752 -0.1066711 0.020258691 2.5841894 10 1.279183 1.266897 0.0071147741 -0.1100294 0.021954268 2.9699498 11 1.279160 1.266893 0.0005521182 -0.7066132 0.007571861 1.6583992 13 1.278389 1.266059 -0.0004027617 0.2032912 0.006230589 1.1255331 14 1.278522 1.266221 -0.0087137038 0.6573750 0.025291745 1.8699858 15 1.278359 1.266072 -0.0476081531 2.4492687 0.033720155 3.3493790 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.395 co2l1 = 0.405 co2l0 = 0.099" [1] "co2l0 = -111.03 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "62 out of 235 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "173 out of 748 1-min values rejected as stack air" [1] "134 out of 690 Line 1 1-min values rejected as stack air" [1] "39 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"