[1] "2025-04-29 17:37:50 MDT" [1] "1301" "130106" "d006" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130106a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 17:37:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.786" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "137 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.786" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "139 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 17:37:54 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 17:37:54 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 17:38:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 17:38:10 MDT" [1] "reading in recalculated plot titles" [1] "Removed 139 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 149 row(s) with high PFRIDGE" [1] "TEMP: 1148 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 17:38:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.96 O2 = -543" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.32 O2 = -625.8" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.406 co2off = 366.93 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 7.87 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 122 128 0.1180579 0.1222310 0.1208399 2 65.789900 44.04890 3 2 129 136 0.1250127 0.1312832 0.1286118 2 -11.356417 199.85984 4 5 137 146 0.1319786 0.1382382 0.1371948 NA 27.924500 98.36801 6 2 362 366 0.3281390 0.3309213 0.3302258 2 -11.071104 196.92233 7 4 367 376 0.3337032 0.3399661 0.3375310 2 65.681461 45.97550 10 4 646 655 0.5354605 0.5417234 0.5392861 2 65.593070 47.45405 11 2 656 665 0.5424190 0.5486817 0.5462454 2 -10.559984 205.66891 13 2 937 945 0.7441399 0.7504035 0.7480156 2 -10.893599 205.95412 14 4 946 955 0.7511019 0.7573646 0.7549286 2 65.867297 45.85733 15 5 956 965 0.7580602 0.7643195 0.7632762 NA 28.421750 100.93408 18 4 1130 1139 0.9528380 0.9591011 0.9566671 2 65.624180 44.49908 19 2 1140 1148 0.9597964 0.9660592 0.9634763 2 -9.416384 206.12289 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.285120 1.273627 -0.001847037 0.02396195 0.003522694 0.5017247 3 1.285660 1.274183 0.001032412 -0.02995221 0.011211648 0.6110959 4 1.285555 1.274031 -0.047161572 0.96609514 0.033410795 2.4486816 6 1.288398 1.270866 0.045835641 -7.29318595 0.045961615 8.8866227 7 1.288303 1.270949 -0.001881565 1.31997792 0.007386412 5.0419594 10 1.285996 1.271027 0.010298490 0.09256306 0.026628593 1.7025578 11 1.285748 1.270887 -0.032943451 1.37253214 0.082138145 4.0968649 13 1.283659 1.271720 0.018913529 0.49656516 0.050350633 3.5124153 14 1.283690 1.271789 -0.005839208 0.61931230 0.016772764 2.9556585 15 1.283777 1.271805 -0.053928096 -0.98896070 0.038183766 2.0917946 18 1.283706 1.270867 -0.011767868 0.87650273 0.029955760 3.4423917 19 1.283350 1.270481 -0.014269107 1.61792853 0.036775411 4.2243715 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.639 co2l1 = 0.406 co2l0 = 0" [1] "co2l0 = -122.78 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "58 out of 375 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "317 out of 981 1-min values rejected as stack air" [1] "317 out of 981 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"